YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RPK1_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLGLVFLL FNLFMFSFSR KLLTESGGGL HDEAALLKLK SSFLDPNGVL SSWVSDSSSN  60
   61 HCSWYGVSCN SDSRVVSLIL RGCDELEGSG VLHLPDLSSC SSSKRRLGGV ISPVVGDLSE 120
  121 IRVLSLSFND LRGEIPKEIW GLEKLEILDL KGNNFIGGIR VVDNVVLRKL MSFEDEDEIG 180
  181 PSSADDDSPG KSGLYPIEIA SIVSASVIVF VLLVLVILFI YTRKWKRNSQ VQVDEIKEIK 240
  241 VFVDIGIPLT YEIIVRATGY FSNSNCIGHG GFGSTYKAEV SPTNVFAVKR LSVGRFQGDQ 300
  301 QFHAEISALE MVRHPNLVML IGYHASETEM FLIYNYLSGG NLQDFIKERS KAAIEWKVLH 360
  361 KIALDVARAL SYLHEQCSPK VLHRDIKPSN ILLDNNYNAY LSDFGLSKLL GTSQSHVTTG 420
  421 VAGTFGYVAP EYAMTCRVSE KADVYSYGIV LLELISDKRA LDPSFSSHEN GFNIVSWAHM 480
  481 MLSQGKAKEV FTTGLWETGP PDDLVEVLHL ALKCTVDSLS IRPTMKQAVR LLKRIQPSRL 540
  541

Type	Start	End	Confidence
Signal Peptide	1	19	0.96
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	198	0.97
Transmembrane Helix	199	221	0.90
Cytoplasmic	222	540	0.85