YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25406102, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.91
Transmembrane Helix	16	37	0.89
Cytoplasmic	38	50	0.84
Transmembrane Helix	51	70	0.90
Non-Cytoplasmic	71	81	0.77
Transmembrane Helix	82	104	0.93
Cytoplasmic	105	114	0.84
Transmembrane Helix	115	136	0.89
Non-Cytoplasmic	137	152	0.85
Transmembrane Helix	153	172	0.89
Cytoplasmic	173	284	0.97
Transmembrane Helix	285	306	0.78
Non-Cytoplasmic	307	322	0.75
Transmembrane Helix	323	343	0.90
Cytoplasmic	344	359	0.72
Transmembrane Helix	360	379	0.88
Non-Cytoplasmic	380	395	0.81
Transmembrane Helix	396	418	0.88
Cytoplasmic	419	425	0.84
Transmembrane Helix	426	447	0.92
Non-Cytoplasmic	448	457	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFSSGNVN SRVVDILSGV VPLLKLICLT VIGLLLAHPK TQLVPRATFR LLSKLVFALF  60
   61 LPCLIFTELG ESITLDNIVQ WWFIPVNVLL SAVVGSLIGY LVVLICRPPP EFNRFTIVMT 120
  121 AFGNTGNLLL AIVSSVCHTK TNPFGPNCNS RGVSYVSFAQ WVAVILVYTV VYHMMEPPLE 180
  181 YYEVVEEEGV EIEEINVENH DASRPLLVEA EWPGIEDKET EHCKTPFIAR VFNSISSFSQ 240
  241 TSFPEVDLGG EYGGESSSPR SIQCLAEPRV MRRIRVVAEQ TPVKHILQPP TIASLLAIII 300
  301 GSVPQLKSVV FGYDAPLSFI TDSLNIMGSA MVPSVMLVLG GMLSEGPNES TLGLRTTIGI 360
  361 SVARLLVLPL VGIGIVMSAD KLGLISSADP MFKFVLLLQY STPSAILLGA IASLRGYAVR 420
  421 EASALLFWQH IFALLSLTFY IVIFFKLTVE TTVQGMQ