YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9798395, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	43	0.91
Non-Cytoplasmic	44	61	0.89
Transmembrane Helix	62	81	0.79
Cytoplasmic	82	92	0.73
Transmembrane Helix	93	119	0.76
Non-Cytoplasmic	120	124	0.74
Transmembrane Helix	125	144	0.90
Cytoplasmic	145	163	0.76
Transmembrane Helix	164	183	0.94
Non-Cytoplasmic	184	188	0.69
Transmembrane Helix	189	208	0.52
Cytoplasmic	209	214	0.53
Transmembrane Helix	215	235	0.55
Non-Cytoplasmic	236	245	0.66
Transmembrane Helix	246	269	0.90
Cytoplasmic	270	276	0.74
Transmembrane Helix	277	298	0.52
Non-Cytoplasmic	299	305	0.63
Transmembrane Helix	306	326	0.87
Cytoplasmic	327	671	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTFLMTVRT SRRVAFHSGK LPVVIGIVSF FAPLFSLSFL NLFTDNIDPH YMSLDKALAE  60
   61 RTVIVITQSQ ILLPSTTYIL LELKIINSEL GRLALSASAI NDMLGIFAMI VATTQATYIH 120
  121 VSHAIAYRDL VAVIIFFLIV FFVFKPMVQW IIDRTPEDKP VEDIYIHAVI LTAFASAAYF 180
  181 VFFNMKYVLG PLIIGIIIPE GPPLGSALEA KFERLTMNVF LPISITFSAM RCDGLRILSQ 240
  241 FTDIYFNIFL TLLILVIKLV ACLTLCLYYK LPRSESLAVS LILSYKSFVE FVLYEAVLEE 300
  301 KFISQATYAF LILYSLLSAG IVPMVVRSMY DPKRKYVNYQ KRDILHLEAN SGLRILTCLH 360
  361 KPENVSETIA FLQLFSSPIH DFPIAVTVLH LVKLVGQINP IIVSHDKKLK RLHKNSYIHT 420
  421 ANLAFRQFMQ ESLESVTVTT FTAFSHENLM HEDICTLALD RTTSMIVVPS GRKWTVDGMF 480
  481 ESDDLAARQL NQSLLDRAPC SIGILVDRGQ FSRKSYVTSK NRYNIDVGVL FIGGKDDREA 540
  541 LSLVKRMKYN PRVRVTVIRL IFDHEIESEW DYILDNEGLK DLKSTESNED ILYTERIVTS 600
  601 VVEVVKAVQL LAEEYDLMVV GRDHDMTSQD LSGLTEWVEL PELGVIGDLL AARDLNSKVS 660
  661 VLVVQQQQQQ T