YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7486965, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	138	0.92
Transmembrane Helix	139	161	0.80
Non-Cytoplasmic	162	181	0.91
Transmembrane Helix	182	200	0.97
Cytoplasmic	201	218	0.81
Transmembrane Helix	219	241	0.90
Non-Cytoplasmic	242	246	0.84
Transmembrane Helix	247	265	0.92
Cytoplasmic	266	283	0.84
Transmembrane Helix	284	302	0.88
Non-Cytoplasmic	303	323	0.79
Transmembrane Helix	324	345	0.88
Cytoplasmic	346	354	0.77
Transmembrane Helix	355	374	0.95
Non-Cytoplasmic	375	381	0.74
Transmembrane Helix	382	401	0.81
Cytoplasmic	402	410	0.71
Transmembrane Helix	411	435	0.88
Non-Cytoplasmic	436	505	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNPRSVSPL VSPANHSDLL ENQRQSGSGD FSRLEKRIGA RKMKFHSKSM PRGAMFLDQE  60
   61 ASRNFHDKRY DLFRTMSGKL ERQISNLRGK PTESSLQDHK EITESLTADR YFDALQGPEL 120
  121 ETLKEKEKIV LPEDKTWPFL LRFPITSYGM CLGVSSQAIM WKTLATTEAE KFLHVTQVIN 180
  181 HVLWWISLLL LLAVSITYLF KTILFFEAVR REFRHPIRVN FFFAPLISIL FLALGIPHSI 240
  241 ISHLPSTLWY FLMAPILFLE MKIYGQWMSG GQRRLSKVAN PTNHLSIVGN FAGALLGASM 300
  301 GLKEGPIFFF AIGLPTNETL PKELHPVFFL FVAAPAVASM AWTKISASFD LGSRLAYFIS 360
  361 LFLYFSLVCR INLFRGFKFS LAWWAYTFPM TAVASATIKY SDEVTGVATK ILSVVMSGAA 420
  421 TLTVIAVLGL TVMHAFVQRD LFPNDVVIAI SAEQPKQKRW FKHLTKESYG NNERCPKILD 480
  481 PEDNQIDLES PPLVNVDSST VQNSN