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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25403219, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRECVVFFSG RVGSGGLVLD AVVAKPRWCE VVPGRFFSWL WTLGVIAVVI LSARLLVVVV  60
   61 ATRGGILAFV LPDRRGLVTV EVRGWWLLAV RVRFGVLSSF SVLIYSERKL LGLTGSRFLS 120
  121 CKRGVFVSAG STSQEPSSQW DSNLPNRLFA TDHYPRGRLN VYSRPDILSF IKKVFDGTEE 180
  181 LDFILQSCFG PLFHLPVSRV ATSGKVIHAL LCRQLLTKKK YEFWTVFGGH PMRFSLLEFA 240
  241 SVTGLPCGEF PDEYDPEDSP VYDDGKKSYW NELIGPDKTV TLGDISAMLT KKRSKLSSDH 300
  301 KLKLTFLLIV DGVLIASNQT GRLTFKYVEM LADLEKFLLF PWGRESFMKT VEAMTPEKRI 360
  361 LAKSTGKRQL TNDPIQNLVK QLQQITFRLK GFPHALQLLA FRNIPGMVDL LKFDDTSLTI 420
  421 LHWKNLTHPT QLITLPQIHS LESNLKRPVD PLIGEDINVD QSWAEWDDEV KDRKVSYMNG 480
  481 LILTAHQFKK SDWPGGDATL PSIKSPKEKS SVVHKKHIVD RKKRLRVKSD PPKSKHSYST 540
  541 RFNQVVRLSD DEKSRLIVDL QNKVEELSNR VMKLEKKRKT VTFKRSRNLA FGFVPLSSRS 600
  601 KRQKSLEVPT QSQSSENPSH SHTLSDEQNE DFDIEHQSEQ KDDSWDVSPP LSHPSTIVQD 660
  661 DEFKKFQDES IDRTTLTNTV ITDDPMDVNH TPHESQDSEK DDATEDNPIY DTGAKDPNDN 720
  721 EPDDEGKIHF DSSANVSNKK QSPLEEHNIM EVNLEAGEAS QSVVEPHPDD PMEANSPDCN 780
  781 SPQGNAASLC ILKDPNDHEA DDEGKIQFDS SANLSQKEQS PLEQDNIMEE TLETVEASHS 840
  841 LLETQPEENI DNDHMTEVTL ESAATSHSVE LPQPDDPMEG NAASHSLLET QPEVNSDGDS 900
  901 MKLHVYINIQ VTLEMPASSH SVSEAQPEEK IGNDPMEDTM ETPPAAHSLT GFAMFSKKKV 960
  961 TMETAAAIHS GVCKDNTDPM KAMVVFVKPV FDTSSKADKE PQSSPTHSPN IVGTRNEDNN1020
 1021 SEHSNSTARE PDQYFELSDS SPARNREKPN LSQAEARLVA EFTSQPILET QALLPTLKKA1080
 1081 EYSQFVKTLS SSPNIEHLTK CGFLISNKFF VELAKPQQWV STLHMEVLVS LLSRRLRTTL1140
 1141 ENHRSAFVDP WFTSHLQAKF RAFNAAKVKS RVRWSEDMQR FIKGSKTEWF KDIDTIYAPM1200
 1201 IWNDCHWVGL SINLGIWSVE ILDPNTDLYD DAKNHGLQPF GWSRIDGIYK NLWSGDCGPV1260
 1261 AMKFLEIQAS DKLPDKKAEI TDKHVDAFRR QYAMDIYKQC VCSLYSSNVS D

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle