YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5123933, gi\|7...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTTMNFVFL FFLPLLINAK PKRVTLHIPL VHNGANFYDS KVVSLPLSSP HSQRGLAFMA  60
   61 EIHFGSPQKK QFLHMDTGSS LTWTQCFPCS DCYAQKIYPK YRPAASITYR DAMCEDSHPK 120
  121 SNPHFAFDPL TRICTYQQHY LDETNIKGTL AQEMITVDTH DGGFKRVHGV YFGCNTLSDG 180
  181 SYFTGTGILG LGVGKYSIIG EFGSKFSFCL GEISEPKASH NLILGDGANV QGHPTVINIT 240
  241 EGHTIFQLES IIVGEEITLD DPVQVFVDTG STLSHLSTNL YYKFVDAFDD LIGSRPLSYE 300
  301 PTLCYKADTI ERLEKMDVGF KFDVGAELSV NIHNIFIQQG PPEIRCLAIQ NNKESFSHVI 360
  361 IGVIAMQGYN VGYDLSAKTA YINKQDCDM

Type	Start	End	Confidence
Signal Peptide	1	19	0.98
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	389	0.99