YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7486337, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHSTSDQSL YIESDDGDDE RKHLSDDEDD DGTLSDTSDA YNQNQHHLSK ASPYSTAWPK  60
   61 SYRQSIDMFG SVPSPNLGFL ANSSMSRRGS SFMSSTLTRR HTPESLPCVT KPLLEDEEAP 120
  121 KHKLSTHSLL PSKPSSSMVV SHDMGISNDS SFGQAVLNGV NVLCGVGILS TPYAVKEGGW 180
  181 LGLIILFAFG ILCFYTGLLL RYCLDSHPDV QTYPDIGHAA FGSTGRILVS VILYMELYAM 240
  241 SVEYIILEGD NLSSMFPNAS LSIGGFHLDA PRLFALLTTL AVLPTVWLRD LSVLSYISAG 300
  301 GVIASVLVVL CLFWVGLVDD VGIHSKGTPL NLATLPVSVG LYGYCYSGHG VFPNIYTSMA 360
  361 KPSQFSAVLL ASFGICTLMY AGVAVMGYSM FGESTESQFT LNLPQDLVAS KIALWTTKES 420
  421 TYALTLSPVA MSLEELIPSN YGKSRFYAIA IRSALAISTL LVGLAIPFFV NLLSLTKFLD 480
  481 TDADTTASLF LEHLKEKSNP YSDLVSQTLQ VKTIMKSCLG FIFNWDLYFT IISSEGVAGE 540
  541 GTLADSVAEF DELQTLVTEA SFASRITDNC L

Type	Start	End	Confidence
Cytoplasmic	1	153	0.87
Transmembrane Helix	154	174	0.77
Non-Cytoplasmic	175	179	0.68
Transmembrane Helix	180	204	0.86
Cytoplasmic	205	221	0.69
Transmembrane Helix	222	247	0.67
Non-Cytoplasmic	248	267	0.71
Transmembrane Helix	268	288	0.82
Cytoplasmic	289	295	0.61
Transmembrane Helix	296	317	0.95
Non-Cytoplasmic	318	331	0.66
Transmembrane Helix	332	352	0.76
Cytoplasmic	353	364	0.59
Transmembrane Helix	365	388	0.87
Non-Cytoplasmic	389	447	0.63
Transmembrane Helix	448	470	0.87
Cytoplasmic	471	571	0.54