YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15230547, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.72
Transmembrane Helix	36	55	0.74
Cytoplasmic	56	65	0.74
Transmembrane Helix	66	87	0.91
Non-Cytoplasmic	88	105	0.87
Transmembrane Helix	106	128	0.83
Cytoplasmic	129	140	0.82
Transmembrane Helix	141	163	0.88
Non-Cytoplasmic	164	173	0.80
Transmembrane Helix	174	196	0.86
Cytoplasmic	197	211	0.82
Transmembrane Helix	212	231	0.91
Non-Cytoplasmic	232	291	0.61
Transmembrane Helix	292	317	0.72
Cytoplasmic	318	323	0.55
Transmembrane Helix	324	342	0.37
Non-Cytoplasmic	343	353	0.63
Transmembrane Helix	354	378	0.68
Cytoplasmic	379	416	0.73
Transmembrane Helix	417	435	0.56
Non-Cytoplasmic	436	705	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIYVQAGLI LGPQLFNLRE VSSRKLSWDP ALDGNGPLRG LSVCGNIMLA FFMTVKISRR  60
   61 LAFNNGWLPI VIGTLSFIVP FLGGFCVRNL HTDNIDPYYM SPNKVLAERI VVISSQSSIL 120
  121 LPTVVHFLSE LKILNSELGR LVLSASLIND IFASTVSIFA YLVGTYKNIS PMTAYRDLIA 180
  181 VIILILVAFC VLRPVVEWIV ERTPEGKPVA DVYVHAVVLS VIASAAYSSF FNMKYLLGPF 240
  241 LLGIIIPEGP PIGSALEAKY EALTMNVLIP ISITFSTMRC DVMKIVYQYD DIWYNIFLMT 300
  301 FTGFLKMATG MVPCLYCKIP FKEAIAASLL LCSKSFSEIF LYESTYDDSY ISQATYTFLI 360
  361 TCALINSGII PTALAGLYDP KRKYVGYQKK NIMNLKPDSD LRILTCIHRP ENISAAISFL 420
  421 QFLPSTIVVT VLHLVKLVGK TVPVLISHNK QINRVVTNSY IHTANLAFSQ LESVTMTMFT 480
  481 AITHENLMHD EICKVALEQA TSIIIVPSGR KWTVDGAFES EDEAIRRLNE SLLKSASCSI 540
  541 GILVDRGQLS LKGTRKFNID VGVIFIGGKD DREALSLVKK MKQNPRVKIT VIRLISDRET 600
  601 ESTNWDYILD HEVLEDLKDT EATNSIAYTE RIVTGGPEVA TTVRSLSEDY DLMVVGRDHG 660
  661 MASPDFDGLM EWVELPELGV IGDLLASREL DSRVSVLVVQ QQQQT