YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR37_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.80
Transmembrane Helix	26	48	0.89
Non-Cytoplasmic	49	62	0.76
Transmembrane Helix	63	85	0.89
Cytoplasmic	86	90	0.68
Transmembrane Helix	91	114	0.87
Non-Cytoplasmic	115	139	0.78
Transmembrane Helix	140	162	0.76
Cytoplasmic	163	177	0.88
Transmembrane Helix	178	199	0.93
Non-Cytoplasmic	200	205	0.79
Transmembrane Helix	206	225	0.96
Cytoplasmic	226	318	0.87
Transmembrane Helix	319	340	0.82
Non-Cytoplasmic	341	358	0.69
Transmembrane Helix	359	381	0.83
Cytoplasmic	382	398	0.74
Transmembrane Helix	399	418	0.81
Non-Cytoplasmic	419	438	0.73
Transmembrane Helix	439	460	0.82
Cytoplasmic	461	476	0.71
Transmembrane Helix	477	499	0.87
Non-Cytoplasmic	500	517	0.85
Transmembrane Helix	518	540	0.90
Cytoplasmic	541	558	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSVTGDAE TAISADSSTK RRGGGWITFP FMIATLLGLT IAAWGWLLNL IVYLIEEFNV  60
   61 KSIAAAQIAN IVSGCICMVP AVAAIASDSF FGTIPVISVS AFISLMGVAL LTLTASLDTL 120
  121 RPRPCETASI LCQSPSKTQL GVLYTAITLA SIGTGGTRFT LATAGANQYE KTKDQGSFFN 180
  181 WFFFTTYLAG AISATAIVYT EDNISWTLGF GLSVAANFFS FLVFVSGKRF YKHDKPLGSP 240
  241 FTSLLCVIFA ALRKRKAVVS TNEKDYHNES ITMPTKSFRF FNRAALKQED EVKPDGTIRN 300
  301 PWRLCSVQQV EDFKAVIRII PLALATIFLS TPIAMQLSLT VLQGLVMDRR LGPSFKIPAG 360
  361 SLQVITLLST CLFIIVNDRV LYPFYQKLTG KHLTPLQRVG IGHAFNILSM AVTAIVEAKR 420
  421 LKIVQKGHFL GSSSVADMSV LWLFPPLVIV GIGEAFHFPG NVALCYQEFP ESMRSTATSI 480
  481 TSVVIGICFY TSTALIDLIQ RTTAWLPDDI NHGRVDNVYW ILVIGGVLNL GYFLVCSWLY 540
  541 RYRNLKDDDH KQAANVSH