YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11357613, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSASKTAS SVSSASSSSA FSPPPTKFSS DSSSPAVQRA FSFPTPLVHH PPARKGDSHH  60
   61 LVSLTSTSYG SLLLLDLDGS KNSSSDQQTL PRISISGKNT PDPVSPDSVI NTWELMDGLD 120
  121 DEFEFEIPKP GKRLNSDFCS KPDPNRNVSL NGSSLKLDES YEIVRIEEDD GDWVPLTYKP 180
  181 KQPLWKHLSE ESFLSDLDPS IVSSYKKALS SKLLSNHSNT RNPHRPTKSL SCSPSSNPSI 240
  241 LISEEPKSVS SSQLISSPAK PRLPGTEDKI VLYFTTLRGI RKTYEDCCCV RAILRGVQVS 300
  301 VDERDISMDS KYRKELQSVL GAAEKPVCLP QVFIRGTHIG GVEEIMQLND GGELAEMLKD 360
  361 FPACERLGTC RSCGDARFVP CTNCDGSTKV FEEQDERFKR CPKCNENGLV RCRVCCL

Type	Start	End	Confidence
Signal Peptide	1	20	0.95
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	417	0.99