YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7340691, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	139	0.94
Transmembrane Helix	140	159	0.87
Non-Cytoplasmic	160	164	0.78
Transmembrane Helix	165	185	0.93
Cytoplasmic	186	203	0.84
Transmembrane Helix	204	224	0.85
Non-Cytoplasmic	225	244	0.80
Transmembrane Helix	245	264	0.86
Cytoplasmic	265	270	0.81
Transmembrane Helix	271	292	0.92
Non-Cytoplasmic	293	309	0.79
Transmembrane Helix	310	331	0.85
Cytoplasmic	332	342	0.88
Transmembrane Helix	343	366	0.93
Non-Cytoplasmic	367	386	0.92
Transmembrane Helix	387	409	0.90
Cytoplasmic	410	428	0.92
Transmembrane Helix	429	449	0.93
Non-Cytoplasmic	450	454	0.68
Transmembrane Helix	455	477	0.90
Cytoplasmic	478	485	0.88
Transmembrane Helix	486	509	0.93
Non-Cytoplasmic	510	516	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQNETFDQE REDLYHTFDE EDEESQTESS VPSTPLSRNR SEDVPVPWPR SYRQSMDLLT  60
   61 GVTPPTSTSF VSSFRQRRQS SVFGSFTSSP SKQQLLIDKD EIQSSVVSSI KSFLASHLQL 120
  121 SVPGDLLTPQ ENRSCTFSQS VLNGINVLCG VALLTMPYAV KEGGWLGLFI LFSFGIITFY 180
  181 TGILLKRCLE NSPGIHTYPD IGQAAFGTTG RILVSASCVE YIIMMSDNLS RMFPNTSLYI 240
  241 NGFSLDSTQV FAITTTLIVL PTVWLKDLSL LSYLSGVISS ILLALCLFWA GSVDGVGFHI 300
  301 SGQALDITNI PVAIGIYGFG FGSHSVFPNI YSSMKEPSKF PTVLLISFAF CTLFYIAVAV 360
  361 CGFTMFGDAI QSQFTLNMPP HFTSSKIAVW TAVVTPMTKY ALTITPVMLS LEELIPSSSR 420
  421 KMRSKGVSML FRTILVLSTL VVALTVPFFA TVAALIGSFI AMLIALIFPC LCYISIMKGR 480
  481 LTNFQIGICI LIVIIGIVSG CCGTYSAIAR LIGEMT