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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSLD4_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTPPQTSK KVRNNSGSGQ TVKFARRTSS GRYVSLSRDN IELSGELSGD YSNYTVHIPP  60
   61 TPDNQPMATK AEEQYVSNSL FTGGFNSVTR AHLMDKVIDS DVTHPQMAGA KGSSCAMPAC 120
  121 DGNVMKDERG KDVMPCECRF KICRDCFMDA QKETGLCPGC KEQYKIGDLD DDTPDYSSGA 180
  181 LPLPAPGKDQ RGNNNNMSMM KRNQNGEFDH NRWLFETQGT YGYGNAYWPQ DEMYGDDMDE 240
  241 GMRGGMVETA DKPWRPLSRR IPIPAAIISP YRLLIVIRFV VLCFFLTWRI RNPNEDAIWL 300
  301 WLMSIICELW FGFSWILDQI PKLCPINRST DLEVLRDKFD MPSPSNPTGR SDLPGIDLFV 360
  361 STADPEKEPP LVTANTILSI LAVDYPVEKV SCYLSDDGGA LLSFEAMAEA ASFADLWVPF 420
  421 CRKHNIEPRN PDSYFSLKID PTKNKSRIDF VKDRRKIKRE YDEFKVRING LPDSIRRRSD 480
  481 AFNAREEMKA LKQMRESGGD PTEPVKVPKA TWMADGTHWP GTWAASTREH SKGDHAGILQ 540
  541 VMLKPPSSDP LIGNSDDKVI DFSDTDTRLP MFVYVSREKR PGYDHNKKAG AMNALVRASA 600
  601 ILSNGPFILN LDCDHYIYNC KAVREGMCFM MDRGGEDICY IQFPQRFEGI DPSDRYANNN 660
  661 TVFFDGNMRA LDGVQGPVYV GTGTMFRRFA LYGFDPPNPD KLLEKKESET EALTTSDFDP 720
  721 DLDVTQLPKR FGNSTLLAES IPIAEFQGRP LADHPAVKYG RPPGALRVPR DPLDATTVAE 780
  781 SVSVISCWYE DKTEWGDRVG WIYGSVTEDV VTGYRMHNRG WRSVYCITKR DSFRGSAPIN 840
  841 LTDRLHQVLR WATGSVEIFF SRNNAILASK RLKFLQRLAY LNVGIYPFTS LFLILYCFLP 900
  901 AFSLFSGQFI VRTLSISFLV YLLMITICLI GLAVLEVKWS GIGLEEWWRN EQWWLISGTS 960
  961 SHLYAVVQGV LKVIAGIEIS FTLTTKSGGD DNEDIYADLY IVKWSSLMIP PIVIAMVNII1020
 1021 AIVVAFIRTI YQAVPQWSKL IGGAFFSFWV LAHLYPFAKG LMGRRGKTPT IVFVWAGLIA1080
 1081 ITISLLWTAI NPNTGPAAAA EGVGGGGFQF P

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle