YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBT6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.96
Transmembrane Helix	53	73	0.85
Non-Cytoplasmic	74	98	0.80
Transmembrane Helix	99	119	0.78
Cytoplasmic	120	128	0.85
Transmembrane Helix	129	147	0.96
Non-Cytoplasmic	148	152	0.68
Transmembrane Helix	153	177	0.84
Cytoplasmic	178	192	0.79
Transmembrane Helix	193	213	0.91
Non-Cytoplasmic	214	220	0.76
Transmembrane Helix	221	241	0.94
Cytoplasmic	242	278	0.96
Transmembrane Helix	279	298	0.86
Non-Cytoplasmic	299	313	0.83
Transmembrane Helix	314	334	0.92
Cytoplasmic	335	343	0.82
Transmembrane Helix	344	364	0.85
Non-Cytoplasmic	365	398	0.66
Transmembrane Helix	399	427	0.62
Cytoplasmic	428	503	0.46

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLETEKFF SDDKPLLKPI SDHSEIKTKA RRNAVVSVLI QPFQWLQMLS SRLNLSFVLG  60
   61 VVLVYGVNQG FSGSIFKVVT DYYWKDVQQV QPSVVQLYMG LYYIPWVMRP IWGLFTDVFP 120
  121 IKGYKRKPYF VVSGVLGLVS AIAIVVLGKL PAALALSCLL GVSAAMAIAD VVIDACIATN 180
  181 SINIRSLAPD IQSLCMVCSS AGALVGYATS GVFVHQLGPQ GALGVLAFSP ATIVILGFFI 240
  241 YEKRSSTVPT QKTKKDTDGL GVAVKGMCKT VKYPEVWKPS LYMFISLALN ISTHEGHFYW 300
  301 YTDPTAGPAF SQEFVGIIYA VGALASMFGV LIYHKKLKGY SFRNILFFAQ LLYVFSGMLD 360
  361 LVFIKRWNLT LGIPDSLFVI TEESFTKMIS KIRWIPMVVL STRLCPLGIE GTFFAFLMCI 420
  421 DSFGQLASKW GGGFVLHAFG VTRHDFGNLW LVILIRNILR LVTVCFVFLV PDSDHLDDLV 480
  481 PSDVLPKKQS EDDDDDDIKL LLL