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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PMTP_ARATH
Protein type: Transmembrane
Type Confidence: 0.75
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMGKYSRVD GKKSSSYGLT ITIVLLLSLC LVGTWMFMSS WSAPADSAGY SSTDTAKDVS  60
   61 KNDLRKEEGD RDPKNFSDEK NEENEAATEN NQVKTDSENS AEGNQVNESS GEKTEAGEER 120
  121 KESDDNNGDG DGEKEKNVKE VGSESDETTQ KEKTQLEEST EENKSEDGNG NEEKAEENAS 180
  181 ETEESTEKSS KEVFPAGDQA EITKESSTGD GAWSTQLVES QNEKKAQQSS ISKDQSSYGW 240
  241 KTCNVTAGPD YIPCLDNWQA IKKLHTTMHY EHRERHCPEE SPHCLVSLPD GYKRSIKWPK 300
  301 SREKIWYNNV PHTKLAEIKG HQNWVKMSGE HLTFPGGGTQ FKNGALHYID FIQQSHPAIA 360
  361 WGNRTRVILD VGCGVASFGG YLFERDVLAL SFAPKDEHEA QVQFALERGI PAMLNVMGTK 420
  421 RLPFPGSVFD LIHCARCRVP WHIEGGKLLL ELNRALRPGG FFVWSATPVY RKNEEDSGIW 480
  481 KAMSELTKAM CWKLVTIKKD KLNEVGAAIY QKPTSNKCYN KRPQNEPPLC KDSDDQNAAW 540
  541 NVPLEACMHK VTEDSSKRGA VWPNMWPERV ETAPEWLDSQ EGVYGKPAPE DFTADQEKWK 600
  601 TIVSKAYLND MGIDWSNVRN VMDMRAVYGG FAAALKDLKL WVMNVVPVDA PDTLPIIYER 660
  661 GLFGIYHDWC ESFNTYPRTY DLLHADHLFS TLRKRCNLVS VMAEIDRILR PQGTFIIRDD 720
  721 METLGEVEKM VKSMKWKVKM TQSKDNEGLL SIEKSWWRPE ETETIKSAIA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle