YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5823576, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	160	0.97
Transmembrane Helix	161	183	0.90
Cytoplasmic	184	234	0.92
Transmembrane Helix	235	254	0.91
Non-Cytoplasmic	255	261	0.77
Transmembrane Helix	262	282	0.92
Cytoplasmic	283	297	0.86
Transmembrane Helix	298	321	0.89
Non-Cytoplasmic	322	337	0.86
Transmembrane Helix	338	358	0.93
Cytoplasmic	359	383	0.88
Transmembrane Helix	384	405	0.94
Non-Cytoplasmic	406	416	0.77
Transmembrane Helix	417	441	0.88
Cytoplasmic	442	450	0.86
Transmembrane Helix	451	473	0.86
Non-Cytoplasmic	474	492	0.83
Transmembrane Helix	493	517	0.89
Cytoplasmic	518	527	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILDNLPALR FAKQNGVTIQ WTGYPVGYSP PNSNDDYIIN HLKFKVLVHE YEGNVMEVIG  60
   61 TGEEGMGVIS EADKKKALGY EIVGFEVVPC SVKYDAEKMT KLHMYDPVPS VNCPLELDKA 120
  121 QIIKEHERIT FTYEVEFVKS ETRWPSRWDA YLKMEGARVH WFSILNSLMV IFFLAGIVFV 180
  181 IFLRTVRRDL TKYEELDKEA QAQMNEELSG WKLVVGDVFR EPEMSKLLCI MVGDGVRITG 240
  241 MAVVTIVFAA LGFMSPASRG MLLTGMIILY LFLGIVAGYA GVRLWRTVKG TSEGWRSLSW 300
  301 SIACFFPGIA FVILTVLNFL LWSSNSTGAI PISLYFELLA LWFCISVPLT LFGGFLGTRA 360
  361 EAIQFPVRTN QIPREIPERK YPSWLLVLGA GTLPFGTLFI ELFFIFSSIW LGRFYYVFGF 420
  421 LLIVLLLLVV VCAEVSVVLT YMHLCVEDWR WWWKAFYASG SVALYVFAYS INYLVFDLQS 480
  481 LSGPVSAMLY IGYSLLMAIA IMLATGTIGF LTSFYFVHYL FSSVKID