YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9755726, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.95
Transmembrane Helix	35	54	0.91
Non-Cytoplasmic	55	62	0.73
Transmembrane Helix	63	84	0.91
Cytoplasmic	85	109	0.89
Transmembrane Helix	110	131	0.90
Non-Cytoplasmic	132	148	0.92
Transmembrane Helix	149	168	0.95
Cytoplasmic	169	175	0.86
Transmembrane Helix	176	198	0.90
Non-Cytoplasmic	199	217	0.83
Transmembrane Helix	218	237	0.92
Cytoplasmic	238	247	0.85
Transmembrane Helix	248	268	0.91
Non-Cytoplasmic	269	291	0.78
Transmembrane Helix	292	309	0.87
Cytoplasmic	310	329	0.87
Transmembrane Helix	330	351	0.91
Non-Cytoplasmic	352	357	0.67
Transmembrane Helix	358	379	0.89
Cytoplasmic	380	391	0.73
Transmembrane Helix	392	410	0.91
Non-Cytoplasmic	411	426	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCVACVEEN KGCECEHEKP VRELVLEAAS ENSSFLHSVI NMVGMLIGLG QLSMPYAVES  60
   61 GGWMSIFLLI SFGILTTYTS HILGKCIRRN PKSKSYSDIG YSAFGRHGRL IVCLFIYLEI 120
  121 FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG 180
  181 GILMSAIIFG SVVYTAIFGG VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK 240
  241 DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT 300
  301 PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL 360
  361 TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL GCVLGVLGSF ESSKLLVKEL 420
  421 VRVHGG