YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PERK4_ARATH
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSPESAPP TNSTSSPSPP SNTNSTTSSP PAPSPPSPTP PQGDSSSSPP PDSTSPPAPQ  60
   61 APNPPNSSNN SPSPPSQGGG GERGNGGNNG GNDTPPSRGS PPSPPSRSNG DNGGSRSSPP 120
  121 GDTGGSRSDN PPSSGGSSGG GGGGRSNTNT AIIVGVLVGA GLLMIVLIIV CLRRKKKRKD 180
  181 SFYPEPMKGN QYQYYGNNNN NNASQNYPNW HLNSQGQNQQ STGGWGGGGP SPPPPPRMPT 240
  241 SGEDSSMYSG PSRPVLPPPS PALALGFNKS TFTYQELAAA TGGFTDANLL GQGGFGYVHK 300
  301 GVLPSGKEVA VKSLKAGSGQ GEREFQAEVD IISRVHHRYL VSLVGYCIAD GQRMLVYEFV 360
  361 PNKTLEYHLH GKNLPVMEFS TRLRIALGAA KGLAYLHEDC HPRIIHRDIK SANILLDFNF 420
  421 DAMVADFGLA KLTSDNNTHV STRVMGTFGY LAPEYASSGK LTEKSDVFSY GVMLLELITG 480
  481 KRPVDNSITM DDTLVDWARP LMARALEDGN FNELADARLE GNYNPQEMAR MVTCAAASIR 540
  541 HSGRKRPKMS QIVRALEGEV SLDALNEGVK PGHSNVYGSL GASSDYSQTS YNADMKKFRQ 600
  601 IALSSQEFPV SDCEGTSSND SRDMGTKSPT PPK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle