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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LYK4_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.79
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISFSFHLLV FILLSLSSFA TAQQPYVGIS TTDCSVSDNT TSVFGYSCNG LNKTCQAYVI  60
   61 FRSTPSFSTV TSISSLFSVD PSLVSSLNDA SPSTSFPSGQ QVIIPLTCSC TGDDSQSNIT 120
  121 YTIQPNDSYF AIANDTLQGL STCQALAKQN NVSSQSLFPG MRIVVPIRCA CPTAKQINED 180
  181 GVKYLMSYTV VFEDTIAIIS DRFGVETSKT LKANEMSFEN SEVFPFTTIL IPLVNPPANT 240
  241 NSLIPPPPPP PPQSVSPPPL SPDGRKSKKK TWVYALAGVL GGALVLSVIG AAIFCLSKKK 300
  301 TKTQTQEETG NLDSFMGKKP PMSDQEFDPL DGLSGMVVES LKVYKFHELQ SATSDFTSSS 360
  361 SIGGSGYIGK INGDGAMIKK IEGNASEEVN LLSKLNHLNI IRLSGFCFHE GDWYLVYEHA 420
  421 SNGSLSEWIH TTKSLLSLTQ KLQIALDIAT GLNYLHNFAD PPYVHRDLNS NNVFLDLEFR 480
  481 AKIGSLGSAR STTEDFVLTK HVEGTRGYLA PEYLEHGLVS TKLDVYAFGV VLLEIVTGKE 540
  541 ASELKKEIDE GKAIDEILIH GRLLPEGLTS FVERLVVDCL KKDHLNRPSM DENVMSLSKI 600
  601 LAATQNWEES SY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle