YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20197046, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDSSSSSSL SLSKNFLRIS VLLLIFPLTF CKTSSTNQTL LFSLKTQKLP QSSSDKLSFR  60
   61 HNVTLTVTLA VGDPPQNISM VLDTGSELSW LHCKKSPNLG SVFNPVSSST YSPVPCSSPI 120
  121 CRTRTRDLPI PASCDPKTHL CHVAISYADA TSIEGNLAHE TFVIGSVTRP GTLFGCMDSG 180
  181 LSSNSEEDAK STGLMGMNRG SLSFVNQLGF SKFSYCISGS DSSGFLLLGD ASYSWLGPIQ 240
  241 YTPLVLQSTP LPYFDRVAYT VQLEGIRVGS KILSLPKSVF VPDHTGAGQT MVDSGTQFTF 300
  301 LMGPVYTALK NEFITQTKSV LRLVDDPDFV FQGTMDLCYK VGSTTRPNFS GLPMVSLMFR 360
  361 GAEMSVSGQK LLYRVNGAGS EGKEEVYCFT FGNSDLLGIE AFVIGHHHQQ NVWMEFDLAK 420
  421 SRVGFAGNVR CDLASQRLGL RD

Type	Start	End	Confidence
Signal Peptide	1	31	0.92
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	442	0.99