YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	B561H_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSSRATLV VLCCLFMLIP SFTTAATEQG LHARSRCESY SFNNGKSFRS CTDLLVLNSY  60
   61 LHFNYAQETG VLEIAYHHSN LESSSWISWA INPTSKGMVG AQALVAYRNS TSGVMRAYTS 120
  121 SINSYSPMLQ ESPLSLRVTQ VSAEYSNGEM MIFATLVLPP NTTVVNHLWQ DGPLKEGDRL 180
  181 GMHAMSGDNL KSMASLDLLS GQVTTTKSVN RNMLLVKQIH AIVNALSWGI LMPIGVMAAR 240
  241 YMKNYEVLDP TWFYIHVVCQ TTGYFSGLIG GLGTAIYMAR HTGMRTTLHT VIGLLLFALG 300
  301 FLQILSLKAR PNKDHKYRKY WNWYHHTMGY IVIVLSIYNI YKGLSILQPG SIWKIAYTTI 360
  361 ICCIAAFAVV MEILQFKKRW ARLFFKKSKD VEADQPTVSV DVIGETEKAE RKKASGGIEI 420
  421 QIENYNITKN FMIPSVFVIS YPHTSPPLLA FHSYHHPSTS IAATAA

Type	Start	End	Confidence
Signal Peptide	1	25	0.99
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	218	0.99
Transmembrane Helix	219	241	0.89
Cytoplasmic	242	251	0.93
Transmembrane Helix	252	277	0.86
Non-Cytoplasmic	278	285	0.84
Transmembrane Helix	286	307	0.91
Cytoplasmic	308	322	0.90
Transmembrane Helix	323	341	0.94
Non-Cytoplasmic	342	354	0.76
Transmembrane Helix	355	376	0.93
Cytoplasmic	377	466	0.94