YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7671493, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.89
Transmembrane Helix	39	59	0.84
Non-Cytoplasmic	60	63	0.78
Transmembrane Helix	64	86	0.88
Cytoplasmic	87	106	0.92
Transmembrane Helix	107	130	0.85
Non-Cytoplasmic	131	150	0.96
Transmembrane Helix	151	171	0.90
Cytoplasmic	172	178	0.79
Transmembrane Helix	179	201	0.89
Non-Cytoplasmic	202	217	0.85
Transmembrane Helix	218	240	0.84
Cytoplasmic	241	251	0.83
Transmembrane Helix	252	275	0.90
Non-Cytoplasmic	276	295	0.96
Transmembrane Helix	296	317	0.89
Cytoplasmic	318	333	0.89
Transmembrane Helix	334	355	0.93
Non-Cytoplasmic	356	361	0.78
Transmembrane Helix	362	383	0.91
Cytoplasmic	384	393	0.80
Transmembrane Helix	394	415	0.91
Non-Cytoplasmic	416	423	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDKDYMSE PFIVKKIDDE ESLLDDYNPQ GNTSFSKTCF HGINALSGVG ILSVPYALAS  60
   61 GGWLSLIILF TVAITTFYCA ILIKRCMEMD PLLRSYPDIG YKAFGNTGRV IVSIFMNLEL 120
  121 YLVATSFLIL EGDNLNKLFS NVGLNFMGLE FQGKQMFIIM VALIILPSVW LDNMRILSYV 180
  181 SASGVFASGV ILASIFSVGA FEGVGFKNND SEVFRLNGVA TSVSLYAFCY CAHPVFPTLY 240
  241 TSMKNKRQFS NVMIICFTIC TFIYASVAVL GYLMYGSDVE SQITLNLPTD KLSSKVAIWT 300
  301 TLVNPIAKFA LMVTPIIDAM RSRFSRVLPN KRASGFLLST ILVTSNVIVA LLLPFFGDLM 360
  361 SLVGAFLSAS ASVILPCLCY LKISGKYQRL GFETLVLIGI TLTGIVVVIT GTYQAVKDIF 420
  421 GRF