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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25407700, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFKSASQRT NDIDNISNYR NLDKVKAEPS EGSTFFRDCL IEWRELNTAE DFILFYEEML  60
   61 PSVQSLSLII MQKERIFSNL VSRLQMKARL SLEPILRLIA ALSRDLLNDF IPFLPQIVNS 120
  121 FVTLLNNGAH NDPEIIQQVV GIHIMGFHNS VPAEVSCVRH RRHSQDEQLE KVPLIHSLVD 180
  181 SSNLKITGMK MILSEVAHPS KKAGGVGVLY NVMRGPCTVV EVVSLVLQRI CEDLEAEKLS 240
  241 AMWEYLYKKI NKSISNKKSV HLSRLLSVLM AVVKIKEGRK VHDIPSLIGI VSRIVSTFFT 300
  301 SSETAVEGDN LSAVLDEVLE LILCTINTVN EMETVASLWA PIFALKSSSL LTFLREFLKK 360
  361 DQSVVKAFTK NILCAINNMI WESSEEVIPL LLTLCEEHKT QQTSHDVVNS ISQTFESRYE 420
  421 RIHEFLEAKI KKVQQNIENA GLAQINEAEL AAIWGVVKCY PYFKVDSSLL ICFKKTLRQH 480
  481 LAVSDGKYQL MIHSFLHSLL GTTLRSCYKM TGINHSDLEE ALSFAKDYKS CEQVLSPVAD 540
  541 VLEFMHRLIH FPILNRRPAL AHGRSKPYPE LQANKAGDAF EIFSENLRHP NKNIRLMTLR 600
  601 ILCHFETLSS DPSFEEHPPK KKMKTEKNVL QLLLLFEETA PTVDTSRMLA GYISTIQDNL 660
  661 SAGRIHSAYV KLVLNGMLGI LHISYRPLCV QASECLAVLV RKYTGAVWSD FVCYLGQCQL 720
  721 KFETLHDHSE NANQSMSERH ACNLNLNGRF NLFLFPPSAI TPTATVSDVV SQLLQTLQKA 780
  781 SSVAQSRASE ILPLLLKFLG YNSENPGSVG SYNGRVCKGE DWKTVLVQWL TLLKLMKNPR 840
  841 FLDDNDAEIQ TNVLECLLLA NDFLLPHRQH LLNLIKPKEL REELTTWNLS ENIGEPHRSY 900
  901 IFSLVIRILM PKVRTLKNSA SRKHTSIRHR KAVLCFISQL DVNELALFFA LLIKPLNIIS 960
  961 EETMDSFWSS GKSSLDYFQN SNFLKYFTVD TISTLSRNQK FGFLHVIQHI LEVFDELRVR1020
 1021 PFLDFMMGCV VRLLVNYAPN VDEEMNIDSL ALRNVTAAPS TSDDKENASI NHDQAGTAFK1080
 1081 QFKELRSLCL KIIAHVLDKY EDCDLGSEFW DLFFSAVSPL IKSFKQEGSS SEKPSSLFSC1140
 1141 FLSMSKSRNL VNLLCREESL VPDIFSILTV TTASEAIKSS ALKFIENLLC LDNVLGEDEN1200
 1201 MIRGFVDPYI EALINSLHSL FIGDILKRKS VKYHGEREIK ILKLLSKRMQ DRSHVMKYLD1260
 1261 VLLSFLNKSV KDPGMVSLLL LLNDIRREAL LAIQDIIAYL GMESTSKIIN TVSPLLVDAE1320
 1321 LDVRLCICDL LESLAKIDFS LDDVRTEALV FFIDFSASIL CREAPAHSEF GKEVKNADVS1380
 1381 WTGDRVLCIL RNFILKHIGD AINRGGIIIK EWILLIREMV TKLPDAANLS AFRPLCSEDE1440
 1441 NVDFFKAIVH IQAHRRARAI SRFSSVVKDS SLPEGVVRKL LVSVFFNMLL EGQDGKDNNV1500
 1501 RNACTEALAS ISAHMSWTSY YALLNRCFRE MNKHTKKGKI LLRLICLILD KFHFAKDGYP1560
 1561 HEAEEIRTCL QKIVFPRMQK LMNSDSDNVN VNSSVAALKV LKLLPEDVLD SNLSSIVHKI1620
 1621 ASFLKNRLES TRDEARLALV ACLKELGLEY LQVVVNILRA ILKRGSEVHV LGYTLNSILS1680
 1681 KCLSNPTCGK LDHCLVDLLA VVETDILGEV AEQKEVEKFA SKMKETRKRK SFETLKLIAE1740
 1741 NVTFRSHGLK LLSPVTAQLQ RHLTPKIKTN LEKMLKQIAA GIEGNTSVDQ GDLFLFIYGL1800
 1801 VDDGINNRSG LGDQVSLPPS KKKKKSRDLK ETSGLCFGPK SCPHLITVFA LDLFYNRMKK1860
 1861 LRLDNTDEEL LSKCFTSLVK FPLPSLTSEA DELKTALLTI AQSAVSSSSP LVQSCLKLLT1920
 1921 TLLKNINITL SSEQLKMLIQ FPIFIDLESD SSFVTLSLLK AIMNRKLVVP EIYDIAIQVS1980
 1981 KLMVNSQLES IRKKCKHILL QFMVHYTLSE KRLEQHVNFL LENLRYEFPT GREAVLDMLH2040
 2041 ALILKFSEPN LGKQSVLDQQ SQKLFIQLTV CLSNETDRKV LPLVGAVIEV LIGRMSKDQQ2100
 2101 NLSAAAAQVL GFFISAMKKT FRKHIYNTVE DARTILESAI SASSLQLQDT VEEASLPFWK2160
 2161 EAYYSLVMIE KMLEQFPDLR FGKDLETSEK YLPSGRKRPE CRTLVADSLL EKPSSLFMVA2220
 2221 VSLCFQLKEQ PTTGNIDVDL LTANIVFAVS SLHSLIGQFD QATHNRFWSS LGEDEQVVFL2280
 2281 KAFEVLDAGK GRSTFLALTS GKRTENGDDD VRNVMIGSLL KRMGKIALDM ESVQMRVMFN2340
 2341 VYKSFASQLN QEECRLYAYK ILLPLYKVCE GYTGKIVTGI ISFFSMKQSS WGCTIFIQLS2400
 2401 LCLIIYVSLH SGHPFFFSSD DGDNATPLDL HFISVAGGFR PLNHQTRLLR LMEKVAETYK2460
 2461 AKFVVSSSEQ GEEDPFLQNA TRLSSSLKLP WYLDPVEWIL LVNLSSVDVT RRLITLLCIR2520
 2521 YTRMKGSGYF REHIKMPFGG SLDVVFVDTG SLKQVGSVCI CEFDRNVFEC LYDQSIERVD2580
 2581 KDSKSSRRRL VSWLFSAIDC LDLSSTCIKY RLCRYLVTKR IVVGSDPLLA YTLTKEPEEP2640
 2641 KRVARTFHQI MTKYGVKGKM GFFFTELASQ SFFSAFGTST LVAVYLSNSS FLSLTVLAHT2700
 2701 LIAIVAALPT LIRSISAFCS SEAMPRRSGD CMRCLVIFAV VSALVVCGPA LYWKFNKGFV2760
 2761 GSTRANSLCP PCVCDCPPPL SLLQIAPGLA NLSITDCGSD DPELKQEMEK QFVDLLTEEL2820
 2821 KLQEAVADEH SRHMNVTLAE AKRVASQYQK EAEKCNAATE ICESARERAE ALLIKERKIT2880
 2881 SLWEKRARQS GWEGE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle