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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2864623, gi|7...
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVVSKNNEQ QSLILTTELL RTAIFNISYI RGLFPVRYFK DMSVPALDLK MKKLMPMDAE  60
   61 SRRLIGWMEK GVYDALHKKH LKKLIFYICE TVDGPLIEEY IFSFSYSDSD SQDVRMNINI 120
  121 TGINTYGGTL NSTADNSTAD MTLNQMSSVD EDFGQNARRS NAFVTYQRFS VYISFHIANY 180
  181 RLCYFFASVQ RTILMKLLYY EYVPPDYQPP FFRGCSEEEE AQYVWPKIPL RMEIGNVNSQ 240
  241 HHVLTVKVKS VLDPYDPCED ENDNMQDDER SKGPDSLHDD QPCKVFTKPS KLILTENKDA 300
  301 DHGEVNEEKL LLITPICEIL QDVKQDQVEH QLAKVKDTKG RPASIVQNPI LQSHEYDIRR 360
  361 LKARLQRLER HISVPDSPQE GIRKWFAAVS SQLFYKVMEA CTRRKPILGD AILSSTVKVQ 420
  421 NFNAKICSKL LKKPASIYRK KHFTLNSASL RISGLAGSIF AWAVGFCLFS AQIGHVFVQP 480
  481 KTRSSESKPK VTMEELEEKL TPPSSEPKSA PPSSEPKSAP PSSEPLEKLA VIRRILPEIF 540
  541 AQRCGQRNSS FEAFAQRRTT YDYYNIRLNP REIIFRRLQE ESKVALALSS ANYFVLSILY 600
  601 RFFRQWSEVS LVRRNSRLTG NPSNEAQSSR SNRIEIPTLL DEPDREGSGG HLAAPEDPVD 660
  661 FLAQFDPLID LEDAYNTQPQ YTEAEVNARL LHEDHVEFDL VPVVSWNTEI TAKKTLSTTE 720
  721 SVAEVFALCG SGDRPLTCMI PGENERPWNP PRGYVCMYEA YFRQCHLWFP IPSLIISFLN 780
  781 RRHMAFSQLT PAAICNFVAA LTFGAEEGYL VNVRCFEEMT TLKAIRSPGY WVVNNRPKHN 840
  841 FLPGPKVSNF KNWEEYYFYV RVDLESYERP FSGRKRMWTE FPDRYRPSPD FPVEFEGVLE 900
  901 AIFRARRRTW KDVTRSRVNR IMGKVRKSFI SFAAGLLNMP PPPAPIEEER QPLDGEAAAS 960
  961 NPPVSAGPSG VDQVSHEMVN PESQDRMCLE GADVVPAQEI AECDRSQSVQ VVEPEVQNIT1020
 1021 DDRSVVVYAA PPAGEEVNTG LTILDQDKDE TVAEPGISRR SREEKGKGGA NQSKKRSASE1080
 1081 AGLDEAAAPK TFRLSRGETL NSDQFTFKYS GEKFLVRDQE AASHLWRNLM LPGTKDFPNP1140
 1141 DDLVLKEGYQ KFARSSLETA ALANDLIATY DRKLKLKLAD REAFDNLKKC ADQAKAIYAK1200
 1201 DMKEMASLRD AAEIHKAEMS SLNDEVKRLN SREADLQKEF SDLQVALVAV KEHGERECNR1260
 1261 LRNDRAAKVA RTTKKAQARL DRVKAYLKEQ EDLVGPKVDA ENQARGAEEI VGILMQRGAK1320
 1321 IAASELSGLK ELTKRATDEV NALNVIELGD DDLNMSPDQL GFSRQISQVA PVADQHGSNV1380
 1381 DLLAEVIRRA SSEERREAEG FLSCVESRHK EYREMLRYYD ERRSDIARKM AMLESHPRHW1440
 1441 LKNGFQLLAP MPDVLLSYCE DCDRDAAAVS KEKNPTIIAD GNFIPRTPSL FYLGPAATDA1500
 1501 DTTECQNFVN QNFVALISQV GFLHQDQCRE LQYFRTKKRS GLSSRRARNS DC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle