YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX16_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.98
Transmembrane Helix	32	55	0.84
Non-Cytoplasmic	56	67	0.66
Transmembrane Helix	68	92	0.81
Cytoplasmic	93	110	0.82
Transmembrane Helix	111	129	0.92
Non-Cytoplasmic	130	144	0.81
Transmembrane Helix	145	166	0.86
Cytoplasmic	167	175	0.83
Transmembrane Helix	176	199	0.91
Non-Cytoplasmic	200	207	0.87
Transmembrane Helix	208	230	0.77
Cytoplasmic	231	248	0.78
Transmembrane Helix	249	269	0.88
Non-Cytoplasmic	270	286	0.76
Transmembrane Helix	287	310	0.83
Cytoplasmic	311	327	0.91
Transmembrane Helix	328	351	0.91
Non-Cytoplasmic	352	367	0.84
Transmembrane Helix	368	392	0.77
Cytoplasmic	393	402	0.79
Transmembrane Helix	403	425	0.88
Non-Cytoplasmic	426	431	0.81
Transmembrane Helix	432	454	0.94
Cytoplasmic	455	486	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDDRERGEG DLSWPLIGEK SSVKEEVKKQ LWLSGPLIAV SLLQFCLQVI SVMFVGHLGS  60
   61 LPLSAASIAT SFASVTGFSF LMGTASALDT LCGQAYGAKK YGMLGIQMQR AMFVLTLASI 120
  121 PLSIIWANTE HLLVFFGQNK SIATLAGSYA KFMIPSIFAY GLLQCFNRFL QAQNNVFPVV 180
  181 FCSGVTTSLH VLLCWVLVFK SGLGFQGAAL ANSISYWLNV VLLFCYVKFS PSCSLTWTGF 240
  241 SKEALRDILP FLRLAVPSAL MVCLEMWSFE LLVLLSGLLP NPVLETSVLS ICLNTSGTMW 300
  301 MIPFGLSGAA STRISNELGA GNPKVAKLAV RVVICIAVAE SIVIGSVLIL IRNIWGLAYS 360
  361 SELEVVSYVA SMMPILALGN FLDSLQCVLS GVARGCGWQK IGAIINLGSY YLVGVPSGLL 420
  421 LAFHFHVGGR GLWLGIICAL VVQVFGLGLV TIFTNWDEEA KKATNRIESS SSVKDFAVDD 480
  481 RSVVVF