YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|225898617, gi...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE  60
   61 DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP AGSAVPVSVI PVDSDPKWHR 120
  121 MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS 180
  181 KLQLDFNKNQ LVEKLRRLKK KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII 240
  241 GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS 300
  301 RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM 360
  361 NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP FNFGFGVEGG GNKAVADERW 420
  421 RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI

Type	Start	End	Confidence
Cytoplasmic	1	366	0.55
Transmembrane Helix	367	390	0.64
Non-Cytoplasmic	391	456	0.77