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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LYK5_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAACTLHALS VTLFLLLFFA VSPAKAQQPY VNNHQLACEV RVYDNITNGF TCNGPPSCRS  60
   61 YLTFWSQPPY NTADSIAKLL NVSAAEIQSI NNLPTATTRI PTRELVVIPA NCSCSSSSGG 120
  121 FYQHNATYNL SGNRGDETYF SVANDTYQAL STCQAMMSQN RYGERQLTPG LNLLVPLRCA 180
  181 CPTAKQTTAG FKYLLTYLVA MGDSISGIAE MFNSTSAAIT EGNELTSDNI FFFTPVLVPL 240
  241 TTEPTKIVIS PSPPPPPVVA TPPQTPVDPP GSSSSHKWIY IGIGIGAGLL LLLSILALCF 300
  301 YKRRSKKKSL PSSLPEENKL FDSSTKQSIP TTTTTQWSID LSNSSEAFGL KSAIESLTLY 360
  361 RFNDLQSATS NFSDENRIKG SVYRATINGD DAAVKVIKGD VSSSEINLLK KLNHSNIIRL 420
  421 SGFCIREGTS YLVFEYSENG SISDWLHSSG KKSLTWKQRV EIARDVAEAL DYLHNYITPP 480
  481 HIHKNLESTN ILLDSNFRAK IANFGVARIL DEGDLDLQLT RHVEGTQGYL APEYVENGVI 540
  541 TSKLDVFAFG VAVLELLSGR EAVTIHKKKE GEEEVEMLCK VINSVLGGEN VREKLKEFMD 600
  601 PSLGNEYPLE LAYTMAQLAK SCVATDLNSR PSVTQVLTTL SMIVSSSIDW EPSDDLLRSG 660
  661 SLGN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle