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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB29B_ARATH
Protein type: Transmembrane
Type Confidence: 0.58
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLLLTPPP CLLIPPPPLS HRRSSSLFLK HPFQPSPRPL SFCKPSALRL RANTTVNSLK  60
   61 ALETIKPYLQ SESKTVLLGW LCSCVSVVSL SQIVPRLGSF TSNLNANAAS LTKLKGECLV 120
  121 LAGLVLAKVV AYYLQQAFLW EAALNTVYKI RVFAYRRVLE RELEFFEGGN GISSGDIAYR 180
  181 ITAEASEVAD TIYALLNTVV PSAIQISVMT AHMIVASPAL TLVSAMVIPS VALLIAYLGD 240
  241 RLRKISRKAQ IASAQLSTYL NEVLPAILFV KANNAEISES VRFQRFARAD LDERFKKKKM 300
  301 KSLIPQIVQV MYLGSLSIFC VGAVILAGSS LSSSAIVSFV ASLAFLIDPV QDLGKAYNEL 360
  361 KQGEPAIERL FDLTSLESKV IERPEAIQLE KVAGEVELCD ISFKYDENML PVLDGLNLHI 420
  421 KAGETVALVG PSGGGKTTLI KLLLRLYEPS SGSIIIDKID IKDIKLESLR KHVGLVSQDT 480
  481 TLFSGTIADN IGYRDLTTGI DMKRVELAAK TANADEFIRN LPEGYNTGVG PRGSSLSGGQ 540
  541 KQRLAIARAL YQKSSILILD EATSALDSLS ELLVREALER VMQDHTVIVI AHRLETVMMA 600
  601 QRVFLVERGK LKELNRSSLL STHKDSLTSA GLVI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle