YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	INT4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.98
Transmembrane Helix	26	48	0.83
Non-Cytoplasmic	49	67	0.82
Transmembrane Helix	68	90	0.91
Cytoplasmic	91	99	0.83
Transmembrane Helix	100	119	0.94
Non-Cytoplasmic	120	123	0.73
Transmembrane Helix	124	145	0.90
Cytoplasmic	146	156	0.81
Transmembrane Helix	157	177	0.91
Non-Cytoplasmic	178	185	0.76
Transmembrane Helix	186	207	0.90
Cytoplasmic	208	276	0.96
Transmembrane Helix	277	298	0.70
Non-Cytoplasmic	299	314	0.75
Transmembrane Helix	315	337	0.91
Cytoplasmic	338	344	0.85
Transmembrane Helix	345	369	0.87
Non-Cytoplasmic	370	455	0.80
Transmembrane Helix	456	481	0.82
Cytoplasmic	482	490	0.66
Transmembrane Helix	491	511	0.80
Non-Cytoplasmic	512	523	0.58
Transmembrane Helix	524	545	0.91
Cytoplasmic	546	582	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEGGIAKAD KTEFTECWRT TWKTPYIMRL ALSAGIGGLL FGYDTGVISG ALLFIKEDFD  60
   61 EVDKKTWLQS TIVSMAVAGA IVGAAVGGWI NDKFGRRMSI LIADVLFLIG AIVMAFAPAP 120
  121 WVIIVGRIFV GFGVGMASMT SPLYISEASP ARIRGALVST NGLLITGGQF FSYLINLAFV 180
  181 HTPGTWRWML GVAGVPAIVQ FVLMLSLPES PRWLYRKDRI AESRAILERI YPADEVEAEM 240
  241 EALKLSVEAE KADEAIIGDS FSAKLKGAFG NPVVRRGLAA GITVQVAQQF VGINTVMYYS 300
  301 PSIVQFAGYA SNKTAMALSL ITSGLNALGS IVSMMFVDRY GRRKLMIISM FGIIACLIIL 360
  361 ATVFSQAAIH APKIDAFESR TFAPNATCSA YAPLAAENAP PSRWNCMKCL RSECGFCASG 420
  421 VQPYAPGACV VLSDDMKATC SSRGRTFFKD GCPSKFGFLA IVFLGLYIVV YAPGMGTVPW 480
  481 IVNSEIYPLR YRGLGGGIAA VSNWVSNLIV SESFLSLTHA LGSSGTFLLF AGFSTIGLFF 540
  541 IWLLVPETKG LQFEEVEKLL EVGFKPSLLR RREKKGKEVD AA