YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPT7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.71
Transmembrane Helix	77	98	0.87
Non-Cytoplasmic	99	150	0.60
Transmembrane Helix	151	173	0.82
Cytoplasmic	174	181	0.71
Transmembrane Helix	182	205	0.90
Non-Cytoplasmic	206	212	0.71
Transmembrane Helix	213	231	0.74
Cytoplasmic	232	243	0.83
Transmembrane Helix	244	265	0.86
Non-Cytoplasmic	266	281	0.76
Transmembrane Helix	282	306	0.76
Cytoplasmic	307	317	0.65
Transmembrane Helix	318	341	0.86
Non-Cytoplasmic	342	393	0.79
Transmembrane Helix	394	415	0.90
Cytoplasmic	416	447	0.85
Transmembrane Helix	448	469	0.89
Non-Cytoplasmic	470	476	0.74
Transmembrane Helix	477	500	0.90
Cytoplasmic	501	559	0.74
Transmembrane Helix	560	582	0.89
Non-Cytoplasmic	583	629	0.69
Transmembrane Helix	630	649	0.92
Cytoplasmic	650	659	0.49
Transmembrane Helix	660	676	0.50
Non-Cytoplasmic	677	677	0.38
Transmembrane Helix	678	698	0.78
Cytoplasmic	699	707	0.61
Transmembrane Helix	708	730	0.90
Non-Cytoplasmic	731	766	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESEQVLPL LTNPKDLTNP SYASSSSSSS EPRDETEDLL LPISDENEEE EEENSPIRQV  60
   61 ALTVPTTDDP SLPVLTFRMW VLGTLSCILL SFLNQFFWYR TEPLTISAIS AQIAVVPLGR 120
  121 LMAAKITDRV FFQGSKWQFT LNPGPFNVKE HVLITIFANA GAGSVYAIHV VTVVKAFYMK 180
  181 NITFFVSFIV IVTTQVLGFG WAGIFRKYLV EPAAMWWPAN LVQVSLFRAL HEKEERTKGG 240
  241 LTRTQFFVIA FVCSFAYYVF PGYLFQIMTS LSWVCWFFPS SVMAQQIGSG LHGLGVGAIG 300
  301 LDWSTISSYL GSPLASPWFA TANVGVGFVL VIYVLVPICY WLDVYKAKTF PIFSSSLFSS 360
  361 QGSKYNITSI IDSNFHLDLP AYERQGPLYL CTFFAISYGV GFAALSATIM HVALFHGREI 420
  421 WEQSKESFKE KKLDVHARLM QRYKQVPEWW FWCILVTNVG ATIFACEYYN DQLQLPWWGV 480
  481 LLACTVAIIF TLPIGIITAI TNQAPGLNII TEYIIGYIYP GYPVANMCFK VYGYISMQQA 540
  541 ITFLQDFKLG HYMKIPPRTM FMAQIVGTLI SCFVYLTTAW WLMETIPNIC DSVTNSVWTC 600
  601 PSDKVFYDAS VIWGLIGPRR IFGDLGLYKS VNWFFLVGAI APILVWLASR MFPRQEWIKL 660
  661 INMPVLISAT SSMPPATAVN YTTWVLAGFL SGFVVFRYRP NLWQRYNYVL SGALDAGLAF 720
  721 MGVLLYMCLG LENVSLDWWG NELDGCPLAS CPTAPGIIVE GCPLYT