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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SBT56_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.97
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLTSLFPL LFLIPLLASC AEEKQVYIVY FGEHKGDKAF HEIEEHHHSY LQSVKESEED  60
   61 ARASLLYSYK HSINGFAAEL TPDQASKLEK LAEVVSVFKS HPRKYEAHTT RSWEFVGLEE 120
  121 EETDSDVPRR KNDADDRFRV GRNFLKKAKH GDGIIVGVLD SGVWPESKSF NDKGMGPVPK 180
  181 SWKGICQTGV AFNSSHCNRK IIGARYYVKG YERYYGAFNA TANKDFLSPR DPDGHGSHTA 240
  241 STAVGRRVLG ASALGGFAKG SASGGAPLAR LAIYKACWAK PNAEKVEGNI CLEEDMLAAI 300
  301 DDAIADGVHV ISISIGTTEP FPFTQDGIAM GALHAVKRNI VVAASAGNSG PKPGTLSNLA 360
  361 PWIITVGAST LDRAFVGGLV LGNGYTIKTD SITAFKMDKF APLVYASNVV VPGIALNETS 420
  421 QCLPNSLKPE LVSGKVVLCL RGAGSRIGKG MEVKRAGGAG MILGNIAANG NEVPSDSHFV 480
  481 PTAGVTPTVV DKILEYIKTD KNPKAFIKPG KTVYKYQAAP SMTGFSSRGP NVVDPNILKP 540
  541 DITAPGLYIL AAWSGADSPS KMSVDQRVAG YNIYSGTSMS CPHVAGAIAL LKAIHPKWSS 600
  601 AAIRSALMTT AWMTNDKKKP IQDTTGLPAN PFALGSGHFR PTKAADPGLV YDASYRAYLL 660
  661 YGCSVNITNI DPTFKCPSKI PPGYNHNYPS IAVPNLKKTV TVKRTVTNVG TGNSTSTYLF 720
  721 SVKPPSGISV KAIPNILSFN RIGQKQRFKI VIKPLKNQVM NATEKGQYQF GWFSWTDKVH 780
  781 VVRSPIAVSL A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle