YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVEQKKPLI ESSDRNLPDF KKSVKLKYVK LGYHYLITHG MYLFLSPLVL VIAAQISTFS  60
   61 VTDLRSLWEH LQYNLISVVV CSMLLVFLMT IYFMTRPRPV YLVNFSCFKP DESRKCTKKI 120
  121 FMDRSKLTGS FTEENLEFQR KILQRSGLGE STYLPEAVLN VPPNPCMKEA RKEAETVMFG 180
  181 AIDELLAKTN VNPKDIGILI VNCSLFNPTP SLSAMVVNHY KLRGNILSYN LGGMGCSAGL 240
  241 ISIDLAKHLL HSIPNTYAMV ISMENITLNW YFGNDRSKLV SNCLFRMGGA AILLSNKRWD 300
  301 RRRSKYELVD TVRTHKGADD KCFGCITQEE DSASKIGVTL SKELMAVAGD ALKTNITTLG 360
  361 PLVLPTSEQL LFFATLVGRK LFKMKIKPYI PDFKLAFEHF CIHAGGRAVL DELEKNLKLT 420
  421 EWHMEPSRMT LYRFGNTSSS SLWYELAYSE AKGRIKKGDR IWQIAFGSGF KCNSSVWRAV 480
  481 RSVNPKKEKN PWMDEIHEFP VEVPKVSTI

Type	Start	End	Confidence
Cytoplasmic	1	34	0.80
Transmembrane Helix	35	56	0.88
Non-Cytoplasmic	57	72	0.71
Transmembrane Helix	73	94	0.92
Cytoplasmic	95	225	0.82
Transmembrane Helix	226	246	0.62
Non-Cytoplasmic	247	509	0.51