YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP22_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.99
Transmembrane Helix	41	63	0.92
Non-Cytoplasmic	64	87	0.85
Transmembrane Helix	88	105	0.97
Cytoplasmic	106	118	0.88
Transmembrane Helix	119	142	0.84
Non-Cytoplasmic	143	150	0.77
Transmembrane Helix	151	172	0.91
Cytoplasmic	173	179	0.79
Transmembrane Helix	180	199	0.93
Non-Cytoplasmic	200	211	0.89
Transmembrane Helix	212	235	0.89
Cytoplasmic	236	253	0.94
Transmembrane Helix	254	275	0.94
Non-Cytoplasmic	276	295	0.93
Transmembrane Helix	296	320	0.84
Cytoplasmic	321	327	0.71
Transmembrane Helix	328	348	0.91
Non-Cytoplasmic	349	353	0.87
Transmembrane Helix	354	374	0.93
Cytoplasmic	375	394	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMTEASKHT TTHEESEHVQ NPEPDQVLSQ RQLLQLNQKK WWISVLICLF LVLLGDSLVI  60
   61 LLLNFFYVQD RREDNNQDLQ YKGTWMQALI QNAAFPILIP LFFIFPSPKP NPETINTRFL 120
  121 SIRLILLYFS LGVLVAAHSK LYALGKLYSS YGFFMLISGS QLIFTLIFTA IINRFKFTRW 180
  181 IIISIVLILV SYAFGGPVFS GEPDENEHFY GIQAWLTFAA SVAFALSLCL VQLSFEKLLV 240
  241 KTKRYGNKKV FRMVLEMQIC VSSVASVVCL VGLFASGEYK ELKGDSERFK KGETYYVLSL 300
  301 VGLALSWQVW AVGLIGLVLY VSSVFSNIVH MCASPLMAFI VVLAFDFIDD DFSWPRIGAL 360
  361 IGSVLALGSY FYTLHKRNKK KMVEFNQSEN NVEV