YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	4CLL7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSGYGRDG IYRSLRPTLV LPKDPNTSLV SFLFRNSSSY PSKLAIADSD TGDSLTFSQL  60
   61 KSAVARLAHG FHRLGIRKND VVLIFAPNSY QFPLCFLAVT AIGGVFTTAN PLYTVNEVSK 120
  121 QIKDSNPKII ISVNQLFDKI KGFDLPVVLL GSKDTVEIPP GSNSKILSFD NVMELSEPVS 180
  181 EYPFVEIKQS DTAALLYSSG TTGTSKGVEL THGNFIAASL MVTMDQDLMG EYHGVFLCFL 240
  241 PMFHVFGLAV ITYSQLQRGN ALVSMARFEL ELVLKNIEKF RVTHLWVVPP VFLALSKQSI 300
  301 VKKFDLSSLK YIGSGAAPLG KDLMEECGRN IPNVLLMQGY GMTETCGIVS VEDPRLGKRN 360
  361 SGSAGMLAPG VEAQIVSVET GKSQPPNQQG EIWVRGPNMM KGYLNNPQAT KETIDKKSWV 420
  421 HTGDLGYFNE DGNLYVVDRI KELIKYKGFQ VAPAELEGLL VSHPDILDAV VIPFPDEEAG 480
  481 EVPIAFVVRS PNSSITEQDI QKFIAKQVAP YKRLRRVSFI SLVPKSAAGK ILRRELVQQV 540
  541 RSKM

Type	Start	End	Confidence
Cytoplasmic	1	91	0.56
Transmembrane Helix	92	106	0.38
Non-Cytoplasmic	107	544	0.72