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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PXC2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNGAVSLLF LFLAVVSARA DPTFNDDVLG LIVFKAGLDD PLSKLSSWNS EDYDPCNWVG  60
   61 CTCDPATNRV SELRLDAFSL SGHIGRGLLR LQFLHTLVLS NNNLTGTLNP EFPHLGSLQV 120
  121 VDFSGNNLSG RIPDGFFEQC GSLRSVSLAN NKLTGSIPVS LSYCSTLTHL NLSSNQLSGR 180
  181 LPRDIWFLKS LKSLDFSHNF LQGDIPDGLG GLYDLRHINL SRNWFSGDVP SDIGRCSSLK 240
  241 SLDLSENYFS GNLPDSMKSL GSCSSIRLRG NSLIGEIPDW IGDIATLEIL DLSANNFTGT 300
  301 VPFSLGNLEF LKDLNLSANM LAGELPQTLS NCSNLISIDV SKNSFTGDVL KWMFTGNSES 360
  361 SSLSRFSLHK RSGNDTIMPI VGFLQGLRVL DLSSNGFTGE LPSNIWILTS LLQLNMSTNS 420
  421 LFGSIPTGIG GLKVAEILDL SSNLLNGTLP SEIGGAVSLK QLHLHRNRLS GQIPAKISNC 480
  481 SALNTINLSE NELSGAIPGS IGSLSNLEYI DLSRNNLSGS LPKEIEKLSH LLTFNISHNN 540
  541 ITGELPAGGF FNTIPLSAVT GNPSLCGSVV NRSCLSVHPK PIVLNPNSSN PTNGPALTGQ 600
  601 IRKSVLSISA LIAIGAAAVI AIGVVAVTLL NVHARSSVSR HDAAAALALS VGETFSCSPS 660
  661 KDQEFGKLVM FSGEVDVFDT TGADALLNKD SELGRGGFGV VYKTSLQDGR PVAVKKLTVS 720
  721 GLIKSQEEFE REMRKLGKLR HKNVVEIKGY YWTQSLQLLI HEFVSGGSLY RHLHGDESVC 780
  781 LTWRQRFSII LGIARGLAFL HSSNITHYNM KATNVLIDAA GEAKVSDFGL ARLLASALDR 840
  841 CVLSGKVQSA LGYTAPEFAC RTVKITDRCD VYGFGILVLE VVTGKRPVEY AEDDVVVLCE 900
  901 TVREGLEEGR VEECVDPRLR GNFPAEEAIP VIKLGLVCGS QVPSNRPEME EVVKILELIQ 960
  961 CPSHDLE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle