YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX43_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.92
Transmembrane Helix	37	54	0.88
Non-Cytoplasmic	55	60	0.64
Transmembrane Helix	61	83	0.78
Cytoplasmic	84	170	0.96
Transmembrane Helix	171	192	0.90
Non-Cytoplasmic	193	214	0.90
Transmembrane Helix	215	236	0.91
Cytoplasmic	237	245	0.83
Transmembrane Helix	246	267	0.89
Non-Cytoplasmic	268	273	0.66
Transmembrane Helix	274	294	0.90
Cytoplasmic	295	317	0.86
Transmembrane Helix	318	338	0.92
Non-Cytoplasmic	339	353	0.77
Transmembrane Helix	354	377	0.71
Cytoplasmic	378	392	0.79
Transmembrane Helix	393	415	0.90
Non-Cytoplasmic	416	423	0.72
Transmembrane Helix	424	448	0.85
Cytoplasmic	449	458	0.74
Transmembrane Helix	459	480	0.92
Non-Cytoplasmic	481	485	0.76
Transmembrane Helix	486	510	0.86
Cytoplasmic	511	526	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETGDDLAT VKKPIPFLVI FKDLRHVFSR DTTGREILGI AFPAALALAA DPIASLIDTA  60
   61 FVGRLGAVQL AAVGVSIAIF NQASRITIFP LVSLTTSFVA EEDTMEKMKE EANKANLVHA 120
  121 ETILVQDSLE KGISSPTSND TNQPQQPPAP DTKSNSGNKS NKKEKRTIRT ASTAMILGLI 180
  181 LGLVQAIFLI FSSKLLLGVM GVKPNSPMLS PAHKYLSIRA LGAPALLLSL AMQGIFRGFK 240
  241 DTKTPLFATV VADVINIVLD PIFIFVLRLG IIGAAIAHVI SQYFMTLILF VFLAKKVNLI 300
  301 PPNFGDLQFG RFLKNGLLLL ARTIAVTFCQ TLAAAMAARL GTTPMAAFQI CLQVWLTSSL 360
  361 LNDGLAVAGQ AILACSFAEK DYNKVTAVAS RVLQMGFVLG LGLSVFVGLG LYFGAGVFSK 420
  421 DPAVIHLMAI GIPFIAATQP INSLAFVLDG VNFGASDFAY TAYSMVGVAA ISIAAVIYMA 480
  481 KTNGFIGIWI ALTIYMALRA ITGIARMATG TGPWRFLRGR SSSSSS