YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX15_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRAVGSALK RNKEAFNGIA RGFTTSSHRV FTSNITAASV TSASSSPLAG NSFYGLRSLL  60
   61 KGQNASMFRR MSTVASISSE SKEGLKLLVT GGPQAQKWVG IWLFGSAAWV FSMVVLGGVT 120
  121 RLTRSGLSMT DWKFTGEFPP LSDEAWAKEF EKYKQSPEYK RVNKGMNLED FKFIYWMEYA 180
  181 HRMWGRGLGI MFALPFSYFL RKGYITLRLG VQLSGLFALG AGQGFIGWWM VKSGLEEPPS 240
  241 EYSQPRVSPY RLAAHLTSAF AIYCGLFWTA LSVVMPEPPA ESLAWVRGAA KVKKLALPVS 300
  301 LIVGITAISG AFVAGNDAGR AFNTFPKMGD TWIPDNIFEM KPLLRNFFEN TATVQLDHRL 360
  361 LATTTLIAIG TMWWFTRKLD IHPAVKALIG STVGMTAVQV TLGVSTLLSY VPVSLGSAHQ 420
  421 AGALTLLTLM LLLNHTLRRP SPSLLKSLPQ VAKSNFS

Type	Start	End	Confidence
Cytoplasmic	1	97	0.83
Transmembrane Helix	98	120	0.91
Non-Cytoplasmic	121	182	0.82
Transmembrane Helix	183	200	0.85
Cytoplasmic	201	208	0.80
Transmembrane Helix	209	231	0.88
Non-Cytoplasmic	232	251	0.96
Transmembrane Helix	252	274	0.92
Cytoplasmic	275	294	0.92
Transmembrane Helix	295	315	0.95
Non-Cytoplasmic	316	355	0.97
Transmembrane Helix	356	376	0.91
Cytoplasmic	377	386	0.85
Transmembrane Helix	387	408	0.91
Non-Cytoplasmic	409	416	0.75
Transmembrane Helix	417	437	0.92
Cytoplasmic	438	457	0.98