YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSLA7_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.52
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPLPIFHRL PHATFSSFLL SLSQAGSSKT SVAFLNAFKS EDIIARIGLW WQLIRAVVVV  60
   61 PVFKFLVLLC LVMSVMFFVE VMYMGIVVLY VKLFKRKPEK FYKWEAMEDD VECGSASYPM 120
  121 VLVQIPMYNE KEVCEQSIAA ACKISWPSNR IIIQVLDDST DPASKELVKK ECDRWSKEGV 180
  181 NITFEIRDNR NGYKAGALRE GMRHSYVKQC DYVAIFDADF QPDPDFLHRT VPFLIHNPKL 240
  241 ALVQGRWEFV NAGQCMMTRL QEMSLSYHFT IEQQVGSSTF AFFGFNGTAG VWRISALNES 300
  301 GGWNDQTTVE DMDLAVRATL RGWKFLYIDD LKVKSELPCS FKALRSQQHR WTCGPANLLR 360
  361 KMAGQIIRSE NVSLWKKWYM LYSFFFMRKI VAHILTFCFY CVILPATVLF PEVTVPKWAA 420
  421 FYLPSLITLL IAIGRLRSIH LLAFWVLFEN AMSLLRAKAL VMGLFETGRV QEWVVTEKLG 480
  481 DTLKTKLIPQ VPNVRFRERV HLLELLVGAY LLFCGIYDIV YGKNTLYVYL LFQSVAFFVV 540
  541 GFGFVGKYVP ASSYLA

Type	Start	End	Confidence
Signal Peptide	1	27	0.51
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	59	0.62
Transmembrane Helix	60	91	0.75
Cytoplasmic	92	389	0.95
Transmembrane Helix	390	410	0.92
Non-Cytoplasmic	411	417	0.85
Transmembrane Helix	418	439	0.81
Cytoplasmic	440	499	0.90
Transmembrane Helix	500	521	0.89
Non-Cytoplasmic	522	528	0.74
Transmembrane Helix	529	549	0.93
Cytoplasmic	550	556	0.85