YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FK119_ARATH
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRLRAHGKK PITITTTTTT TASTFLYWSP ESSPTALSSP TNLDPNIWSN LPNHLLEHIL  60
   61 SLLPFKTLLT LRSISRHLRS LILSPSFISD HSFSLPSFLL LSHPQSFNSF PLFNPNLISW 120
  121 CTLPLPRSLS LTCASSLLSS SNGLLCFSLS PSSVSSLSIF NPLTRSSRSI KLPCYPFPFE 180
  181 LLSLVTSPKG YKIFTLCSSS SAASSRSVCL YDSGDRSWRK FGGVDQVLPR GFNQDGVFYN 240
  241 GSLYFARSEP FLIVSVDLND GKWTTATGDG VFPADDEITF ARLVSDPEKK ILYMVGGIGS 300
  301 NGICRSIKIW EFKEETESWI EVETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW 360
  361 PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSFVPSLS ASV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.70
Transmembrane Helix	12	29	0.61
Non-Cytoplasmic	30	54	0.75
Transmembrane Helix	55	70	0.47
Cytoplasmic	71	80	0.50
Transmembrane Helix	81	101	0.43
Non-Cytoplasmic	102	403	0.80