YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPAT5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMEQAGTTS YSVVSEFEGT ILKNADSFSY FMLVAFEAAG LIRFAILLFL WPVITLLDVF  60
   61 SYKNAALKLK IFVATVGLRE PEIESVARAV LPKFYMDDVS MDTWRVFSSC KKRVVVTRMP 120
  121 RVMVERFAKE HLRADEVIGT ELIVNRFGFV TGLIRETDVD QSALNRVANL FVGRRPQLGL 180
  181 GKPALTASTN FLSLCEEHIH APIPENYNHG DQQLQLRPLP VIFHDGRLVK RPTPATALII 240
  241 LLWIPFGIIL AVIRIFLGAV LPLWATPYVS QIFGGHIIVK GKPPQPPAAG KSGVLFVCTH 300
  301 RTLMDPVVLS YVLGRSIPAV TYSISRLSEI LSPIPTVRLT RIRDVDAAKI KQQLSKGDLV 360
  361 VCPEGTTCRE PFLLRFSALF AELTDRIVPV AMNYRVGFFH ATTARGWKGL DPIFFFMNPR 420
  421 PVYEITFLNQ LPMEATCSSG KSPHDVANYV QRILAATLGF ECTNFTRKDK YRVLAGNDGT 480
  481 VSYLSLLDQL KKVVSTFEPC LH

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.85
Transmembrane Helix	39	60	0.84
Cytoplasmic	61	236	0.95
Transmembrane Helix	237	261	0.86
Non-Cytoplasmic	262	502	0.73