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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PSD1B_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.51
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAMVSSAG GLLAMLNEPH PSLKLHALSY LIRLVDQFWP EISTSVPIIE SLYEDEEFDQ  60
   61 HQRQLAALLA SKVFYYLGEL NDSLSYALGA GSLFDVSEDS DYIHTLLSKA IDEYAILRSK 120
  121 AVESSEVVEI DPRLVAIVER MLDKCITDGK YQQAMGIAIE CRRLDKLEEA IIKSENVQGT 180
  181 LSYCINVSHS FVNQREYRHE VLRLLVNVYQ KLASPDYLSI CQCLMFLDEP QGVASILEKL 240
  241 LRSENKDDAL LAFQISFDLV QNEHQAFLMS VRDRLPAPKT RPVEAIQAVE TSTAQNENTA 300
  301 GDVQMADETP SQTIVHETDP VDAVYAERLT KAKGILSGET SIQLTLQFLY SHNKSDLLIL 360
  361 KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD WLSRATNWAK FSATAGLGVI 420
  421 HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTS 480
  481 VEVIQHGACL GLGLAALGTA DEDIYDDIKS VLYTDSAVAG EAAGISMGLL LVGTATDKAS 540
  541 EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY 600
  601 SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY 660
  661 GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA MAMVMVQISE ASDSRVGAFR 720
  721 RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLTVFSQFW 780
  781 YWYPLIYFIS LAFSPTAFIG LNYDLKVPKF EFMSHAKPSL FEYPKPTTVA TANTAAKLPT 840
  841 AVLSTSAKAK AKAKKEAEQK AKAENSGNEA GKANAASDEK EAESMQVDST ATTVEKKVEP 900
  901 EATFEILVNP ARVVPSQEKY IKLMEDSRYV PMKLAPSGFV LLRDLRPHEP EVLSLTDAPT 960
  961 STASPAVGAE AAGQAQQAAT TSAMAIDDEP QPPQAFEYAS P

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle