YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARASP_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLNISSSPI SHRNPHFLSN FNNPISYFPR RSKTHLSKSH FFPKFTPLSN QSLKNRVLFG  60
   61 NKRYPDGERF DFRSRAISGI DLGSFESVLE AIAVLTTIIV VHESGHFLAA SLQGIHVSKF 120
  121 AIGFGPILAK FDYNNVEYSL RAFPLGGFVG FPDNDPDSEI PIDDENLLKN RPTLDRSIVV 180
  181 SAGIIANVIF AYAIIFVQVL SVGLPVQEAF PGVLVPEVKT FSAASRDGLL SGDVILAVDG 240
  241 TELSKTGPDA VSKIVDIVKR NPKSNVVFRI ERGGEDFDIR VTPDKNFDGT GKIGVQLSPN 300
  301 VRITKVRPRN IPETFRFVGR EFMGLSSNVL DGLKQTFFNF SQTASKVAGP VAIIAVGAEV 360
  361 ARSNIDGLYQ FAALLNINLA VINLLPLPAL DGGTLALILL EAVRGGKKLP VEVEQGIMSS 420
  421 GIMLVIFLGL FLIVKDTLSL DFIKEML

Type	Start	End	Confidence
Cytoplasmic	1	177	0.68
Transmembrane Helix	178	200	0.80
Non-Cytoplasmic	201	378	0.65
Transmembrane Helix	379	400	0.62
Cytoplasmic	401	414	0.33
Transmembrane Helix	415	438	0.80
Non-Cytoplasmic	439	447	0.40