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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SD18_ARATH
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGLPNFYHS YTFFFFFLLI LFPAYSISAN TLSASESLTI SSNNTIVSPG NVFELGFFKP  60
   61 GLDSRWYLGI WYKAISKRTY VWVANRDTPL SSSIGTLKIS DSNLVVLDQS DTPVWSTNLT 120
  121 GGDVRSPLVA ELLDNGNFVL RDSKNSAPDG VLWQSFDFPT DTLLPEMKLG WDAKTGFNRF 180
  181 IRSWKSPDDP SSGDFSFKLE TEGFPEIFLW NRESRMYRSG PWNGIRFSGV PEMQPFEYMV 240
  241 FNFTTSKEEV TYSFRITKSD VYSRLSISSS GLLQRFTWIE TAQNWNQFWY APKDQCDEYK 300
  301 ECGVYGYCDS NTSPVCNCIK GFKPRNPQVW GLRDGSDGCV RKTLLSCGGG DGFVRLKKMK 360
  361 LPDTTTASVD RGIGVKECEQ KCLRDCNCTA FANTDIRGSG SGCVTWTGEL FDIRNYAKGG 420
  421 QDLYVRLAAT DLEDKRNRSA KIIGSSIGVS VLLLLSFIIF FLWKRKQKRS ILIETPIVDH 480
  481 QLRSRDLLMN EVVISSRRHI SRENNTDDLE LPLMEFEEVA MATNNFSNAN KLGQGGFGIV 540
  541 YKGKLLDGQE MAVKRLSKTS VQGTDEFKNE VKLIARLQHI NLVRLLACCV DAGEKMLIYE 600
  601 YLENLSLDSH LFDKSRNSKL NWQMRFDIIN GIARGLLYLH QDSRFRIIHR DLKASNILLD 660
  661 KYMTPKISDF GMARIFGRDE TEANTRKVVG TYGYMSPEYA MDGIFSMKSD VFSFGVLLLE 720
  721 IISSKRNKGF YNSDRDLNLL GCVWRNWKEG KGLEIIDPII TDSSSTFRQH EILRCIQIGL 780
  781 LCVQERAEDR PTMSLVILML GSESTTIPQP KAPGYCLERS LLDTDSSSSK QRDDESWTVN 840
  841 QITVSVLDAR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle