YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX55_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.76
Transmembrane Helix	58	85	0.63
Non-Cytoplasmic	86	110	0.47
Transmembrane Helix	111	134	0.85
Cytoplasmic	135	176	0.61
Transmembrane Helix	177	199	0.89
Non-Cytoplasmic	200	207	0.65
Transmembrane Helix	208	229	0.90
Cytoplasmic	230	263	0.94
Transmembrane Helix	264	283	0.91
Non-Cytoplasmic	284	298	0.89
Transmembrane Helix	299	322	0.85
Cytoplasmic	323	341	0.87
Transmembrane Helix	342	364	0.90
Non-Cytoplasmic	365	381	0.82
Transmembrane Helix	382	401	0.81
Cytoplasmic	402	420	0.76
Transmembrane Helix	421	441	0.93
Non-Cytoplasmic	442	446	0.71
Transmembrane Helix	447	468	0.87
Cytoplasmic	469	502	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVEEDSRLI NLQHKYNPTM PEVVEELKRI WDISFPVAAM SILNYLKNMT SVVCMGRLGS  60
   61 LELAGGALAI GFTNITGYSV LSGLATGMEP LCGQAIGSKN PSLASLTLKR TIFLLLLASL 120
  121 PISLLWLNLA PLMLMLRQQH DITRVASLYC SFSLPDLLAN SFLHPLRIYL RCKGTTWPLM 180
  181 WCTLVSVLLH LPITAFFTFY ISLGVPGVAV SSFLTNFISL SLLLCYIYLE NNNNDKTTSK 240
  241 SLCLDTPLML YGSRDSGEND VWSTLVKFAV PSCIAVCLEW WWYEFMTVLA GYLPEPKVAL 300
  301 AAAAIVIQTT SLMYTIPTAL SAAVSTRVSN ELGAGRPEKA KTAATVAVGA AVAVSVFGLV 360
  361 GTTVGREAWG KVFTADKVVL ELTAAVIPVI GACELANCPQ TISCGILRGS ARPGIGAKIN 420
  421 FYAFYVVGAP VAVVLAFVWG LGFMGLCYGL LGAQLACAIS ILTVVYNTDW NKESLKAHDL 480
  481 VGKNVISPNV DQIIVKCEEG LH