YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUC2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.98
Transmembrane Helix	32	53	0.84
Non-Cytoplasmic	54	66	0.75
Transmembrane Helix	67	87	0.93
Cytoplasmic	88	101	0.88
Transmembrane Helix	102	121	0.96
Non-Cytoplasmic	122	138	0.88
Transmembrane Helix	139	158	0.92
Cytoplasmic	159	177	0.91
Transmembrane Helix	178	199	0.92
Non-Cytoplasmic	200	219	0.93
Transmembrane Helix	220	244	0.84
Cytoplasmic	245	278	0.98
Transmembrane Helix	279	299	0.92
Non-Cytoplasmic	300	330	0.96
Transmembrane Helix	331	353	0.89
Cytoplasmic	354	362	0.88
Transmembrane Helix	363	382	0.95
Non-Cytoplasmic	383	406	0.86
Transmembrane Helix	407	429	0.87
Cytoplasmic	430	440	0.69
Transmembrane Helix	441	458	0.91
Non-Cytoplasmic	459	473	0.75
Transmembrane Helix	474	495	0.93
Cytoplasmic	496	512	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSHPMEKAA NGASALETQT GELDQPERLR KIISVSSIAA GVQFGWALQL SLLTPYVQLL  60
   61 GIPHKWASLI WLCGPISGML VQPIVGYHSD RCTSRFGRRR PFIVAGAGLV TVAVFLIGYA 120
  121 ADIGHSMGDQ LDKPPKTRAI AIFALGFWIL DVANNTLQGP CRAFLADLSA GNAKKTRTAN 180
  181 AFFSFFMAVG NVLGYAAGSY RNLYKVVPFT MTESCDLYCA NLKTCFFLSI TLLLIVTFVS 240
  241 LCYVKEKPWT PEPTADGKAS NVPFFGEIFG AFKELKRPMW MLLIVTALNW IAWFPFLLFD 300
  301 TDWMGREVYG GNSDATATAA SKKLYNDGVR AGALGLMLNA IVLGFMSLGV EWIGRKLGGA 360
  361 KRLWGIVNFI LAICLAMTVV VTKQAENHRR DHGGAKTGPP GNVTAGALTL FAILGIPQAI 420
  421 TFSIPFALAS IFSTNSGAGQ GLSLGVLNLA IVVPQMVISV GGGPFDELFG GGNIPAFVLG 480
  481 AIAAAVSGVL ALTVLPSPPP DAPAFKATMG FH