YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPA28_ARATH
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCSIGNWKH TVLYLTLIVS LLYFIESLIS HKLHINYNKI RLKRSPNLPL RFRDDGTFKI  60
   61 LQVADMHFGM GMITRCRDVL DSEFEYCSDL NTTRFLRRMI ESERPDLIAF TGDNIFGSST 120
  121 TDAAESLLEA IGPAIEYGIP WAAVLGNHDH ESTLNRLELM TFLSLMDFSV SQINPLVEDE 180
  181 TKGDTMRLID GFGNYRVRVY GAPGSVLANS TVFDLFFFDS GDREIVQGKR TYGWIKESQL 240
  241 RWLQDTSIQG HSQRIHVNPP ALAFFHIPIL EVRELWYTPF IGQFQEGVAC SIVQSGVLQT 300
  301 FVSMGNVKAA FMGHDHVNDF CGTLKGVWFC YGGGFGYHAY GRPNWHRRAR VIEAKLGKGR 360
  361 DTWEGIKLIK TWKRLDDEYL SKIDEQVLWE TSDSFLK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.44
Transmembrane Helix	10	28	0.60
Non-Cytoplasmic	29	397	0.80