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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SCP50_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQATTLFIL LSTLLLAVSV ESPQPPLFPD EALPTKSGYL PVKPAPGSSM FYAFYEAQEP  60
   61 TTPLPDTPLL VWLQGGPGCS SMIGNFYELG PWRVVSRATD LERNPGAWNR LFGLLFVDNP 120
  121 IGVGFSIAAS QQDIPTNQRQ VAEHLYAALV EFLEQNPSFE NRPVYFTGES YAGKYVPAIG 180
  181 YYILKEKPNG KVNLKGLAIG NGLTDPVTQV QTHAVNVYYS GLVNAKQRVE LQKAQEISVA 240
  241 LVKSQKWREA ADARTELLTL LSNMTGLATL YNTARAIPYR TDLVVDLLNQ REAKRVLGVS 300
  301 ETVRFEECSD EVEDVLRADV MKSVKFMVEY ALERTQVLLY QGMLDLRDGV VSTEEWMKTM 360
  361 NWSGLGMFST AERRVWKDED GVVAGYVQRW GNLCHVAVTG AGHFVPTDKA VNSRDMIEGW 420
  421 VLGKGLFGGK DVKQTTSSSL YHSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle