YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX50_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.82
Transmembrane Helix	46	67	0.67
Non-Cytoplasmic	68	71	0.48
Transmembrane Helix	72	97	0.70
Cytoplasmic	98	114	0.60
Transmembrane Helix	115	136	0.81
Non-Cytoplasmic	137	154	0.65
Transmembrane Helix	155	175	0.65
Cytoplasmic	176	185	0.82
Transmembrane Helix	186	207	0.90
Non-Cytoplasmic	208	215	0.69
Transmembrane Helix	216	238	0.90
Cytoplasmic	239	266	0.94
Transmembrane Helix	267	288	0.80
Non-Cytoplasmic	289	300	0.70
Transmembrane Helix	301	323	0.82
Cytoplasmic	324	343	0.87
Transmembrane Helix	344	364	0.95
Non-Cytoplasmic	365	382	0.86
Transmembrane Helix	383	405	0.78
Cytoplasmic	406	419	0.75
Transmembrane Helix	420	440	0.93
Non-Cytoplasmic	441	446	0.73
Transmembrane Helix	447	467	0.89
Cytoplasmic	468	505	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSNRVRDE VTLPLLQKTS HLKNHSSVLS VFLNEAISIC KISYPLVLTG LFLYVRSFVS  60
   61 LSFLGGLGDA TLAGGSLAAA FANITGYSLF SGLTMGVESI CSQAFGARRY NYVCASVKRG 120
  121 IILLLVTSLP VTLLWMNMEK ILLILKQDKK LASEAHIFLL YSVPDLVAQS FLHPLRVYLR 180
  181 TQSKTLPLSI CTVIASFLHL PITFFLVSYL GLGIKGIALS GVVSNFNLVA FLFLYICFFE 240
  241 DKLSVNEDEK ITEETCEDSV REWKKLLCLA IPSCISVCLE WWCYEIMILL CGFLLDPKAS 300
  301 VASMGILIQI TSLVYIFPHS LSLGVSTRVG NELGSNQPKR ARRAAIVGLG LSIALGFTAF 360
  361 AFTVSVRNTW AMFFTDDKEI MKLTAMALPI VGLCELGNCP QTTGCGVLRG SARPKIGANI 420
  421 NGVAFYAVGI PVGAVLAFWF GFGFKGLWLG MLAAQITCVI GMMAATCRTD WELEAERAKV 480
  481 LTTAVDCGSS DDDAKEDMEA GMVDK