YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX27_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.94
Transmembrane Helix	48	67	0.86
Non-Cytoplasmic	68	84	0.73
Transmembrane Helix	85	104	0.85
Cytoplasmic	105	121	0.77
Transmembrane Helix	122	141	0.92
Non-Cytoplasmic	142	155	0.81
Transmembrane Helix	156	177	0.87
Cytoplasmic	178	188	0.85
Transmembrane Helix	189	209	0.94
Non-Cytoplasmic	210	226	0.75
Transmembrane Helix	227	248	0.86
Cytoplasmic	249	260	0.77
Transmembrane Helix	261	279	0.80
Non-Cytoplasmic	280	303	0.68
Transmembrane Helix	304	325	0.76
Cytoplasmic	326	337	0.82
Transmembrane Helix	338	361	0.87
Non-Cytoplasmic	362	381	0.72
Transmembrane Helix	382	404	0.79
Cytoplasmic	405	411	0.70
Transmembrane Helix	412	433	0.87
Non-Cytoplasmic	434	440	0.68
Transmembrane Helix	441	463	0.88
Cytoplasmic	464	486	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGGDGEEGS ESRVALLKSP HTAEEDGEGL KDRILVETKK LWQIVGPAIF SRVTTYSMLV  60
   61 ITQAFAGHLG DLELAAISIV NNVTVGFNFG LLLGMASALE TLCGQAFGAK KYHMLGVYMQ 120
  121 RSWIVLFFCC VLLLPTYIFT TPVLKFLGQP DDIAELSGVV AIWVIPLHFA FTLSFPLQRF 180
  181 LQCQLKNRVT AYAAAVALVV HILVCWLFVD GLKLGVVGTV ATISISWWVN VLILLVYSTC 240
  241 GGCPLTWTGL SSEALTGLWE FLKLSASSGV MLCLENWYYR ILIIMTGNLQ NARIAVDSLS 300
  301 ICMAINGWEM MIPLAFFAGT GVRVANELGA GNGKGARFAT IVSVTQSLII GLFFWVLIML 360
  361 LHNQIAWIFS SSVAVLDAVN KLSLLLAFTV LLNSVQPVLS GVAVGSGWQS YVAYINLGCY 420
  421 YCIGVPLGFL MGWGFKLGVM GIWGGMIFGG TAVQTMILSF ITMRCDWEKE AQKASARINK 480
  481 WSNTIK