YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	6PGD2_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.38
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESVALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS NEGKLPVAGQ  60
   61 YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG DCIIDGGNEW YQNTERRIVE 120
  121 AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFTAYNNVKD ILEKVAAQVE DGPCVTYIGE 180
  181 GGSGNFVKMV HNGIEYGDMQ LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT 240
  241 SDIFRVKDDY GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD 300
  301 ERENAAKVLE EAGLKEDIGS ASRGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSLEK 360
  361 GWDLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL VVDPDFAKEM VQRQAAWRRV 420
  421 VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT 480
  481 KLARKSQ

Type	Start	End	Confidence
Signal Peptide	1	18	0.70
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	420	0.95
Transmembrane Helix	421	441	0.54
Cytoplasmic	442	487	0.51