YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.72
Transmembrane Helix	74	92	0.44
Non-Cytoplasmic	93	94	0.33
Transmembrane Helix	95	122	0.76
Cytoplasmic	123	188	0.65
Transmembrane Helix	189	211	0.91
Non-Cytoplasmic	212	218	0.83
Transmembrane Helix	219	242	0.86
Cytoplasmic	243	332	0.96
Transmembrane Helix	333	354	0.84
Non-Cytoplasmic	355	369	0.86
Transmembrane Helix	370	390	0.89
Cytoplasmic	391	409	0.80
Transmembrane Helix	410	431	0.87
Non-Cytoplasmic	432	451	0.80
Transmembrane Helix	452	473	0.63
Cytoplasmic	474	493	0.56
Transmembrane Helix	494	516	0.77
Non-Cytoplasmic	517	537	0.54
Transmembrane Helix	538	562	0.84
Cytoplasmic	563	582	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVEEVGDDY TKDGTVDLQG NPVRRSIRGR WKACSFVVVY EVFERMAYYG ISSNLFIYMT  60
   61 TKLHQGTVKS SNNVTNWVGT SWLTPILGAY VGDALLGRYI TFVISCAIYF SGMMVLTLSV 120
  121 TIPGIKPPEC STTNVENCEK ASVLQLAVFF GALYTLAIGT GGTKPNISTI GADQFDVFDP 180
  181 KEKTQKLSFF NWWMFSIFFG TLFANTVLVY VQDNVGWTLG YGLPTLGLAI SITIFLLGTP 240
  241 FYRHKLPTGS PFTKMARVIV ASFRKANAPM THDITSFHEL PSLEYERKGA FPIHPTPSLR 300
  301 FLDRASLKTG TNHKWNLCTT TEVEETKQML RMLPVLFITF VPSMMLAQIN TLFVKQGTTL 360
  361 DRKVTGSFSI PPASLSGFVT LSMLISIVLY DRVFVKITRK FTGNPRGITL LQRMGIGLIF 420
  421 HILIMIVASV TERYRLKVAA DHGLIHQTGV KLPLTIFALL PQFVLMGMAD SFLEVAKLEF 480
  481 FYDQAPESMK SLGTSYSTTS LAIGNFMSSF LLSTVSEITK KRGRGWILNN LNESRLDYYY 540
  541 LFFAVLNLVN FVLFLVVVKF YVYRAEVTDS VDVKEVEMKE TE